39 items (Myxococcus stipitatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGC41455.1	Methylmalonate-semialdehyde dehydrogenase. (494 aa)
	AGC41981.1	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (479 aa)
	AGC41982.1	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (484 aa)
	AGC42465.1	Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (343 aa)
	AGC42497.1	enoyl-CoA hydratase. (262 aa)
	AGC42509.1	propionyl-CoA carboxylase subunit beta. (526 aa)
	AGC43047.1	Class IV aminotransferase. (274 aa)
	AGC43646.1	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (253 aa)
	AGC43905.1	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (510 aa)
	AGC44084.1	Hypothetical protein. (321 aa)
	AGC44418.1	enoyl-CoA hydratase. (360 aa)
	ilvE	Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (315 aa)
	AGC44821.1	acyl-CoA dehydrogenase. (383 aa)
	AGC44997.1	hydroxymethylglutaryl-CoA synthase. (420 aa)
	AGC45037.1	Alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase. (465 aa)
	AGC45039.1	Alpha keto acid dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase. (417 aa)
	AGC45156.1	methylmalonyl-CoA mutase. (729 aa)
	AGC45157.1	methylmalonyl-CoA mutase subunit beta. (624 aa)
	AGC45426.1	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
	AGC45427.1	3-oxoacid CoA-transferase subunit A. (232 aa)
	AGC45428.1	3-oxoacid CoA-transferase subunit B. (218 aa)
	AGC45484.1	hydroxymethylglutaryl-CoA lyase. (324 aa)
	AGC46109.1	3-ketoacyl-CoA thiolase. (384 aa)
	AGC46117.1	3-hydroxybutyryl-CoA dehydratase. (265 aa)
	AGC46265.1	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa)
	AGC46266.1	Fatty oxidation complex subunit alpha. (725 aa)
	AGC46307.1	2-oxoisovalerate dehydrogenase complex, E1 component subunit alpha. (335 aa)
	AGC46308.1	2-oxoisovalerate dehydrogenase complex, E1 component subunit beta. (352 aa)
	AGC46911.1	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa)
	AGC47211.1	Multifunctional fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family. (742 aa)
	AGC47212.1	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (433 aa)
	AGC47396.1	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (410 aa)
	AGC47456.1	enoyl-CoA hydratase. (254 aa)
	AGC47495.1	2-aminomuconic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (496 aa)
	AGC47718.1	enoyl-CoA hydratase. (275 aa)
	AGC47770.1	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (398 aa)
	AGC47782.1	acyl-CoA dehydrogenase. (411 aa)
	AGC47812.1	acyl-CoA dehydrogenase. (378 aa)
	AGC49016.1	long-chain-fatty-acid--CoA ligase. (514 aa)

Your Current Organism:

Myxococcus stipitatus

NCBI taxonomy Id: 1278073
Other names: M. stipitatus DSM 14675, Myxococcus stipitatus DSM 14675

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGC41455.1	AGC41981.1	MYSTI_00096	MYSTI_00631	Methylmalonate-semialdehyde dehydrogenase.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.926
AGC41455.1	AGC41982.1	MYSTI_00096	MYSTI_00632	Methylmalonate-semialdehyde dehydrogenase.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.926
AGC41455.1	AGC42509.1	MYSTI_00096	MYSTI_01161	Methylmalonate-semialdehyde dehydrogenase.	propionyl-CoA carboxylase subunit beta.	0.910
AGC41455.1	AGC43905.1	MYSTI_00096	MYSTI_02589	Methylmalonate-semialdehyde dehydrogenase.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.916
AGC41455.1	AGC45039.1	MYSTI_00096	MYSTI_03733	Methylmalonate-semialdehyde dehydrogenase.	Alpha keto acid dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase.	0.911
AGC41455.1	AGC45426.1	MYSTI_00096	MYSTI_04126	Methylmalonate-semialdehyde dehydrogenase.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.909
AGC41455.1	AGC46109.1	MYSTI_00096	MYSTI_04819	Methylmalonate-semialdehyde dehydrogenase.	3-ketoacyl-CoA thiolase.	0.909
AGC41455.1	AGC46265.1	MYSTI_00096	MYSTI_04977	Methylmalonate-semialdehyde dehydrogenase.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.909
AGC41455.1	AGC46266.1	MYSTI_00096	MYSTI_04978	Methylmalonate-semialdehyde dehydrogenase.	Fatty oxidation complex subunit alpha.	0.921
AGC41455.1	AGC46911.1	MYSTI_00096	MYSTI_05634	Methylmalonate-semialdehyde dehydrogenase.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.909
AGC41455.1	AGC47211.1	MYSTI_00096	MYSTI_05936	Methylmalonate-semialdehyde dehydrogenase.	Multifunctional fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.	0.921
AGC41455.1	AGC47212.1	MYSTI_00096	MYSTI_05937	Methylmalonate-semialdehyde dehydrogenase.	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.909
AGC41455.1	AGC47396.1	MYSTI_00096	MYSTI_06123	Methylmalonate-semialdehyde dehydrogenase.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.909
AGC41455.1	AGC47495.1	MYSTI_00096	MYSTI_06222	Methylmalonate-semialdehyde dehydrogenase.	2-aminomuconic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.923
AGC41455.1	AGC47770.1	MYSTI_00096	MYSTI_06497	Methylmalonate-semialdehyde dehydrogenase.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.909
AGC41981.1	AGC41455.1	MYSTI_00631	MYSTI_00096	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Methylmalonate-semialdehyde dehydrogenase.	0.926
AGC41981.1	AGC41982.1	MYSTI_00631	MYSTI_00632	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.626
AGC41981.1	AGC42509.1	MYSTI_00631	MYSTI_01161	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	propionyl-CoA carboxylase subunit beta.	0.820
AGC41981.1	AGC45039.1	MYSTI_00631	MYSTI_03733	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Alpha keto acid dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase.	0.822
AGC41981.1	AGC46266.1	MYSTI_00631	MYSTI_04978	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Fatty oxidation complex subunit alpha.	0.921