STRINGSTRING
FFUJ_01272 FFUJ_01272 FFUJ_01402 FFUJ_01402 FFUJ_01379 FFUJ_01379 FFUJ_01134 FFUJ_01134 FFUJ_00869 FFUJ_00869 FFUJ_01052 FFUJ_01052 LSM8 LSM8 FFUJ_00471 FFUJ_00471 FFUJ_01681 FFUJ_01681 FFUJ_01495 FFUJ_01495 FFUJ_00177 FFUJ_00177 FFUJ_01205 FFUJ_01205 FFUJ_00867 FFUJ_00867 FFUJ_01584 FFUJ_01584 FFUJ_01227 FFUJ_01227 FFUJ_00986 FFUJ_00986 FFUJ_00976 FFUJ_00976 FFUJ_04088 FFUJ_04088 FFUJ_02860 FFUJ_02860 FFUJ_02802 FFUJ_02802 FFUJ_02836 FFUJ_02836 FFUJ_03022 FFUJ_03022 FFUJ_04545 FFUJ_04545 LSM4 LSM4 FFUJ_03278 FFUJ_03278 FFUJ_02601 FFUJ_02601 FFUJ_13157 FFUJ_13157 FFUJ_13156 FFUJ_13156 LSM5 LSM5 FFUJ_03216 FFUJ_03216 FFUJ_13512 FFUJ_13512 FFUJ_13102 FFUJ_13102 FFUJ_13019 FFUJ_13019 FFUJ_03128 FFUJ_03128 FFUJ_07200 FFUJ_07200 FFUJ_07660 FFUJ_07660 FFUJ_07315 FFUJ_07315 FFUJ_05641 FFUJ_05641 FFUJ_07320 FFUJ_07320 FFUJ_05637 FFUJ_05637 LSM3 LSM3 FFUJ_08944 FFUJ_08944 FFUJ_07984 FFUJ_07984 FFUJ_07926 FFUJ_07926 FFUJ_05792 FFUJ_05792 FFUJ_09783 FFUJ_09783 FFUJ_09751 FFUJ_09751 FFUJ_09745 FFUJ_09745
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
FFUJ_01272Related to small nuclear ribonucleoprotein B. (204 aa)
FFUJ_01402Related to ATP dependent RNA helicase. (2209 aa)
FFUJ_01379Related to splicing factor 3A subunit 2. (240 aa)
FFUJ_01134Related to small nuclear ribonucleoprotein U2B. (203 aa)
FFUJ_00869U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (120 aa)
FFUJ_01052Probable RNA-binding protein (RRM superfamily). (116 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
FFUJ_00471Small nuclear ribonucleoprotein G. (91 aa)
FFUJ_01681Probable DUF866 domain protein. (160 aa)
FFUJ_01495Related to U4/U6 snRNP-associated 61 kDa protein. (630 aa)
FFUJ_00177Related to splicing factor 3B subunit 3 (Spliceosomal protein sap130). (1172 aa)
FFUJ_01205Related to RNA helicase. (1247 aa)
FFUJ_00867Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (123 aa)
FFUJ_01584Related to snRNP protein SMX3. (89 aa)
FFUJ_01227Related to PKR1 protein. (168 aa)
FFUJ_00986Related to U4/U6 small nuclear ribonucleoprotein. (519 aa)
FFUJ_00976Related to LSM6-Sm-like (Lsm) protein. (83 aa)
FFUJ_04088Probable ribosomal elongation factor EF-2. (983 aa)
FFUJ_02860Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
FFUJ_02802Probable nuclear protein. (1210 aa)
FFUJ_02836Small nuclear ribonucleoprotein Sm D2. (118 aa)
FFUJ_03022Probable U5 snRNP 100 kD protein; Belongs to the DEAD box helicase family. (723 aa)
FFUJ_04545Related to U2 snRNP protein A. (243 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (123 aa)
FFUJ_03278Related to U1 small nuclear ribonucleoprotein. (392 aa)
FFUJ_02601Probable spliceosome-associated protein SAP-49. (357 aa)
FFUJ_13157Small nuclear ribonucleoprotein Sm D3. (115 aa)
FFUJ_13156Uncharacterized protein. (266 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
FFUJ_03216Related to splicing factor 3B subunit 3 (Spliceosomal protein sap130). (1192 aa)
FFUJ_13512Related to DNA binding protein SART-1. (644 aa)
FFUJ_13102CID domain-containing protein. (509 aa)
FFUJ_13019Related to RNA splicing factor PRP9. (501 aa)
FFUJ_03128Probable pre-mRNA splicing factor. (110 aa)
FFUJ_07200Probable pre-mRNA splicing factor prp1. (930 aa)
FFUJ_07660Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
FFUJ_07315U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (199 aa)
FFUJ_05641Related to snRNP protein. (133 aa)
FFUJ_07320Related to SRP40 Suppressor of mutant AC40 of RNA polymerase I and III. (318 aa)
FFUJ_05637Related to spliceosome-associated-protein. (534 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
FFUJ_08944Uncharacterized protein. (321 aa)
FFUJ_07984Probable U5 snRNP-specific 40 kD protein (Novel WD-40 repeat protein). (354 aa)
FFUJ_07926Probable splicing factor PRP8 (U5 snRNP). (3379 aa)
FFUJ_05792Splicing factor subunit; Belongs to the SF3B5 family. (80 aa)
FFUJ_09783Related to spliceosome associated protein 145. (603 aa)
FFUJ_09751Related to U4/U6 small nuclear ribonucleoprotein hPrp3. (468 aa)
FFUJ_09745Related to small nuclear ribonucleoprotein snRNP U1A. (243 aa)
Your Current Organism:
Fusarium fujikuroi
NCBI taxonomy Id: 1279085
Other names: F. fujikuroi IMI 58289, Fusarium fujikuroi IMI 58289, Fusarium fujikuroi IMI58289, Gibberella fujikuroi IMI 58289
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