(28 nodes) Maturation of LSU-rRNA network (Fusarium fujikuroi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FFUJ_02695	Probable hydroxyacylglutathione hydrolase. (309 aa)
	FFUJ_02694	Uncharacterized protein. (347 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (475 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (830 aa)
	FFUJ_02480	Probable Protein trm-112. (127 aa)
	FFUJ_13419	HIT-type domain-containing protein. (428 aa)
	FFUJ_13431	Protein MAK16; Belongs to the MAK16 family. (319 aa)
	FFUJ_02942	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	FFUJ_13308	Related to RRP15 Essential protein involved in pre-rRNA processing. (300 aa)
	FFUJ_13477	Probable nucleolar protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (679 aa)
	FFUJ_07143	Related to high mobility group-like protein NHP2. (241 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (766 aa)
	FFUJ_07851	Related to ribosomal RNA processing protein RRP5. (1791 aa)
	FFUJ_07931	Probable 60s ribosomal protein L7 subunit. (248 aa)
	FFUJ_08872	annotation not available (374 aa)
	FFUJ_07902	Related to nucleolar protein NOP4 (NOP77). (737 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (661 aa)
	FFUJ_07806	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (439 aa)
	FFUJ_06032	Probable ribosomal protein L7a.e.B, cytosolic. (261 aa)
	FFUJ_08596	Related to RNA processing factor 1. (415 aa)
	FFUJ_12294	Related to URB1 Nucleolar protein required for the normal accumulation of 25S and 5.8S rRNAs. (1130 aa)
	FFUJ_09788	F-box domain-containing protein. (431 aa)
	FFUJ_09789	Probable BRX1 Nucleolar protein involved in the assembly of the large ribosomal subunit. (307 aa)
	FFUJ_09860	Related to RNA binding protein. (373 aa)
	FFUJ_01325	Probable NSA2-involved in biogenesis of ribosomal large subunit. (260 aa)
	FFUJ_01377	Related to nuclear GTPase. (544 aa)
	FFUJ_01367	Probable RNA binding protein Rpf2 involved in ribosome biogenesis. (317 aa)
	FFUJ_01202	Probable ribosomal protein L35. (124 aa)

Your Current Organism:

Fusarium fujikuroi

NCBI taxonomy Id: 1279085
Other names: F. fujikuroi IMI 58289, Fusarium fujikuroi IMI 58289, Fusarium fujikuroi IMI58289, Gibberella fujikuroi IMI 58289

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	FFUJ_01202	S0E1Y4	S0DPY6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Probable ribosomal protein L35.	0.958
ERB1	FFUJ_01325	S0E1Y4	S0DLI3	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Probable NSA2-involved in biogenesis of ribosomal large subunit.	0.991
ERB1	FFUJ_01367	S0E1Y4	S0DPR9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Probable RNA binding protein Rpf2 involved in ribosome biogenesis.	0.993
ERB1	FFUJ_01377	S0E1Y4	S0DNG9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to nuclear GTPase.	0.999
ERB1	FFUJ_02480	S0E1Y4	S0DVY0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Probable Protein trm-112.	0.476
ERB1	FFUJ_02694	S0E1Y4	S0DTH8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.797
ERB1	FFUJ_02695	S0E1Y4	S0DTE8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Probable hydroxyacylglutathione hydrolase.	0.799
ERB1	FFUJ_02942	S0E1Y4	S0DZ95	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.742
ERB1	FFUJ_06032	S0E1Y4	S0EAL0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Probable ribosomal protein L7a.e.B, cytosolic.	0.965
ERB1	FFUJ_07143	S0E1Y4	S0E111	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to high mobility group-like protein NHP2.	0.946
ERB1	FFUJ_07806	S0E1Y4	S0E9T7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.744
ERB1	FFUJ_07851	S0E1Y4	S0E3A0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to ribosomal RNA processing protein RRP5.	0.947
ERB1	FFUJ_07902	S0E1Y4	S0E932	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to nucleolar protein NOP4 (NOP77).	0.956
ERB1	FFUJ_07931	S0E1Y4	S0E3Z0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Probable 60s ribosomal protein L7 subunit.	0.996
ERB1	FFUJ_08596	S0E1Y4	S0EC13	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to RNA processing factor 1.	0.986
ERB1	FFUJ_08872	S0E1Y4	S0E8Y6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	annotation not available	0.993
ERB1	FFUJ_09788	S0E1Y4	S0EEM5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	F-box domain-containing protein.	0.983
ERB1	FFUJ_09789	S0E1Y4	S0EFE6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Probable BRX1 Nucleolar protein involved in the assembly of the large ribosomal subunit.	0.989
ERB1	FFUJ_09860	S0E1Y4	S0ENE6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to RNA binding protein.	0.984
ERB1	FFUJ_12294	S0E1Y4	S0EC14	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to URB1 Nucleolar protein required for the normal accumulation of 25S and 5.8S rRNAs.	0.793