17 items (Fusarium fujikuroi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FFUJ_12161	Uncharacterized protein. (617 aa)
	FFUJ_01636	Related to nucleoporin-interacting protein NIC96. (1161 aa)
	FFUJ_01519	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (924 aa)
	FFUJ_01344	Uncharacterized protein. (1161 aa)
	FFUJ_02472	Uncharacterized protein. (329 aa)
	FFUJ_04412	Related to nuclear pore protein NUP57. (327 aa)
	FFUJ_03027	Related to nuclear pore protein NSP1. (711 aa)
	FFUJ_04579	Related to myosin-like protein. (2072 aa)
	FFUJ_13599	Related to nuclear pore membrane protein POM152. (1244 aa)
	FFUJ_07386	Related to nuclear pore protein NSP1. (1201 aa)
	FFUJ_07496	Related to NUP133 Nuclear pore protein. (1370 aa)
	FFUJ_08811	Related to NUP170-nuclear pore protein. (1403 aa)
	FFUJ_08622	Uncharacterized protein. (890 aa)
	FFUJ_06022	Related to Nup98-Nup96. (1936 aa)
	FFUJ_09611	Uncharacterized protein. (483 aa)
	FFUJ_08674	Related to nucleoporin nup184. (1821 aa)
	FFUJ_08653	Related to nucleoporin. (1662 aa)

Your Current Organism:

Fusarium fujikuroi

NCBI taxonomy Id: 1279085
Other names: F. fujikuroi IMI 58289, Fusarium fujikuroi IMI 58289, Fusarium fujikuroi IMI58289, Gibberella fujikuroi IMI 58289

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FFUJ_01344	FFUJ_01519	S0DNI8	S0DIF4	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.988
FFUJ_01344	FFUJ_01636	S0DNI8	S0DHW1	Uncharacterized protein.	Related to nucleoporin-interacting protein NIC96.	0.913
FFUJ_01344	FFUJ_02472	S0DNI8	S0DSI9	Uncharacterized protein.	Uncharacterized protein.	0.440
FFUJ_01344	FFUJ_03027	S0DNI8	S0DU14	Uncharacterized protein.	Related to nuclear pore protein NSP1.	0.415
FFUJ_01344	FFUJ_04412	S0DNI8	S0DSJ5	Uncharacterized protein.	Related to nuclear pore protein NUP57.	0.940
FFUJ_01344	FFUJ_04579	S0DNI8	S0DUJ1	Uncharacterized protein.	Related to myosin-like protein.	0.575
FFUJ_01344	FFUJ_06022	S0DNI8	S0ECI8	Uncharacterized protein.	Related to Nup98-Nup96.	0.991
FFUJ_01344	FFUJ_07386	S0DNI8	S0E174	Uncharacterized protein.	Related to nuclear pore protein NSP1.	0.965
FFUJ_01344	FFUJ_07496	S0DNI8	S0E886	Uncharacterized protein.	Related to NUP133 Nuclear pore protein.	0.991
FFUJ_01344	FFUJ_08653	S0DNI8	S0EFX4	Uncharacterized protein.	Related to nucleoporin.	0.883
FFUJ_01344	FFUJ_08674	S0DNI8	S0EFV3	Uncharacterized protein.	Related to nucleoporin nup184.	0.965
FFUJ_01344	FFUJ_08811	S0DNI8	S0E8D6	Uncharacterized protein.	Related to NUP170-nuclear pore protein.	0.840
FFUJ_01344	FFUJ_09611	S0DNI8	S0EFS1	Uncharacterized protein.	Uncharacterized protein.	0.440
FFUJ_01344	FFUJ_12161	S0DNI8	S0EIU9	Uncharacterized protein.	Uncharacterized protein.	0.440
FFUJ_01344	FFUJ_13599	S0DNI8	S0DYR3	Uncharacterized protein.	Related to nuclear pore membrane protein POM152.	0.593
FFUJ_01519	FFUJ_01344	S0DIF4	S0DNI8	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.988
FFUJ_01519	FFUJ_01636	S0DIF4	S0DHW1	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Related to nucleoporin-interacting protein NIC96.	0.996
FFUJ_01519	FFUJ_02472	S0DIF4	S0DSI9	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.938
FFUJ_01519	FFUJ_03027	S0DIF4	S0DU14	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Related to nuclear pore protein NSP1.	0.987
FFUJ_01519	FFUJ_04412	S0DIF4	S0DSJ5	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Related to nuclear pore protein NUP57.	0.988