STRINGSTRING
FFUJ_05919 FFUJ_05919 FFUJ_06167 FFUJ_06167 PAN2 PAN2 FFUJ_08644 FFUJ_08644 FFUJ_08499 FFUJ_08499 FFUJ_08321 FFUJ_08321 FFUJ_13833 FFUJ_13833 FFUJ_05892 FFUJ_05892 FFUJ_08546 FFUJ_08546 FFUJ_13777 FFUJ_13777 FFUJ_08535 FFUJ_08535 LSM1 LSM1 FFUJ_09719 FFUJ_09719 FFUJ_08698 FFUJ_08698 FFUJ_09831 FFUJ_09831 FFUJ_04690 FFUJ_04690 FFUJ_01478 FFUJ_01478 FFUJ_01279 FFUJ_01279 FFUJ_01314 FFUJ_01314 FFUJ_01347 FFUJ_01347 FFUJ_01851 FFUJ_01851 FFUJ_13241 FFUJ_13241 FFUJ_03273 FFUJ_03273 FFUJ_02905 FFUJ_02905 FFUJ_04843 FFUJ_04843 FFUJ_00771 FFUJ_00771 FFUJ_00772 FFUJ_00772 FFUJ_13635 FFUJ_13635 FFUJ_07502 FFUJ_07502 FFUJ_13255 FFUJ_13255 FFUJ_07095 FFUJ_07095 FFUJ_13467 FFUJ_13467 FFUJ_07592 FFUJ_07592 PAN3 PAN3 FFUJ_06037 FFUJ_06037
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
FFUJ_05919Related to exosome complex exonuclease. (333 aa)
FFUJ_06167annotation not available (245 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1087 aa)
FFUJ_08644Probable rRNA processing protein. (293 aa)
FFUJ_08499Protein VTS1. (616 aa)
FFUJ_08321Related to rRNA processing protein. (339 aa)
FFUJ_13833Uncharacterized protein. (219 aa)
FFUJ_05892Probable SUP35-eukaryotic peptide chain release factor GTP-binding subunit. (704 aa)
FFUJ_08546Related to PUB1-major polyadenylated RNA-binding protein of nucleus and cytoplasm. (474 aa)
FFUJ_13777Related to CCR4 protein. (698 aa)
FFUJ_08535Related to decapping enzyme. (833 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (169 aa)
FFUJ_09719Related to caffeine-induced death protein 1 Cid1. (1055 aa)
FFUJ_08698Related to POP2-required for glucose derepression. (484 aa)
FFUJ_09831Uncharacterized protein. (260 aa)
FFUJ_04690Related to histidine triad protein member. (328 aa)
FFUJ_01478Related to nuclear poly(A)-binding protein. (504 aa)
FFUJ_01279Related to RRP46 protein, involved in rRNA processing. (250 aa)
FFUJ_01314Related to DNA-directed RNA polymerase II chain. (158 aa)
FFUJ_01347YTH domain-containing protein. (637 aa)
FFUJ_01851annotation not available (624 aa)
FFUJ_13241Related to nucleolar 100K polymyositis-scleroderma protein. (811 aa)
FFUJ_03273Related to RNA-binding protein pumilio. (756 aa)
FFUJ_02905Probable RNA binding protein. (1160 aa)
FFUJ_04843Related to topoisomerase II-associated protein. (816 aa)
FFUJ_00771Uncharacterized protein. (272 aa)
FFUJ_00772Related to Drosophila pumilio protein and Mpt5p protein. (867 aa)
FFUJ_13635Related to Gbp2p. (490 aa)
FFUJ_07502Related to 3`->5` exoribonuclease. (333 aa)
FFUJ_13255SAM domain-containing protein. (173 aa)
FFUJ_07095Related to NOT3-general negative regulator of transcription, subunit 3. (609 aa)
FFUJ_13467Related to RNA-binding protein pumilio. (769 aa)
FFUJ_07592Probable CPC2 protein. (316 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (672 aa)
FFUJ_06037Related to CDC39 protein. (2170 aa)
Your Current Organism:
Fusarium fujikuroi
NCBI taxonomy Id: 1279085
Other names: F. fujikuroi IMI 58289, Fusarium fujikuroi IMI 58289, Fusarium fujikuroi IMI58289, Gibberella fujikuroi IMI 58289
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