STRINGSTRING
FFUJ_07393 FFUJ_07393 FFUJ_01495 FFUJ_01495 FFUJ_00867 FFUJ_00867 FFUJ_01584 FFUJ_01584 FFUJ_00986 FFUJ_00986 FFUJ_04088 FFUJ_04088 FFUJ_04506 FFUJ_04506 FFUJ_02860 FFUJ_02860 FFUJ_02836 FFUJ_02836 LSM4 LSM4 LSM5 LSM5 FFUJ_13512 FFUJ_13512 FFUJ_07200 FFUJ_07200 FFUJ_07660 FFUJ_07660 FFUJ_13449 FFUJ_13449 FFUJ_05641 FFUJ_05641 LSM3 LSM3 FFUJ_07923 FFUJ_07923 FFUJ_00471 FFUJ_00471 FFUJ_07926 FFUJ_07926 FFUJ_09751 FFUJ_09751 FFUJ_01570 FFUJ_01570 FFUJ_01272 FFUJ_01272 FFUJ_01402 FFUJ_01402 FFUJ_00869 FFUJ_00869 LSM8 LSM8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
FFUJ_07393Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (124 aa)
FFUJ_01495Related to U4/U6 snRNP-associated 61 kDa protein. (630 aa)
FFUJ_00867Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (123 aa)
FFUJ_01584Related to snRNP protein SMX3. (89 aa)
FFUJ_00986Related to U4/U6 small nuclear ribonucleoprotein. (519 aa)
FFUJ_04088Probable ribosomal elongation factor EF-2. (983 aa)
FFUJ_04506Related to C2H2 finger domain protein. (237 aa)
FFUJ_02860Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
FFUJ_02836Small nuclear ribonucleoprotein Sm D2. (118 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (123 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
FFUJ_13512Related to DNA binding protein SART-1. (644 aa)
FFUJ_07200Probable pre-mRNA splicing factor prp1. (930 aa)
FFUJ_07660Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
FFUJ_13449SNRNP27 domain-containing protein. (248 aa)
FFUJ_05641Related to snRNP protein. (133 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
FFUJ_07923Related to potassium channel regulatory factor. (346 aa)
FFUJ_00471Small nuclear ribonucleoprotein G. (91 aa)
FFUJ_07926Probable splicing factor PRP8 (U5 snRNP). (3379 aa)
FFUJ_09751Related to U4/U6 small nuclear ribonucleoprotein hPrp3. (468 aa)
FFUJ_01570Uncharacterized protein. (309 aa)
FFUJ_01272Related to small nuclear ribonucleoprotein B. (204 aa)
FFUJ_01402Related to ATP dependent RNA helicase. (2209 aa)
FFUJ_00869U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (120 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
Your Current Organism:
Fusarium fujikuroi
NCBI taxonomy Id: 1279085
Other names: F. fujikuroi IMI 58289, Fusarium fujikuroi IMI 58289, Fusarium fujikuroi IMI58289, Gibberella fujikuroi IMI 58289
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