35 items (Fusarium fujikuroi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FFUJ_13749	Related to DNA-dependent ATPase DOMINO B. (1906 aa)
	FFUJ_09554	Related to transcription initiation factor IIF 30K chain. (245 aa)
	FFUJ_09793	PAPA-1 domain-containing protein. (400 aa)
	FFUJ_11102	Related to transcription activator protein acu-15. (712 aa)
	FFUJ_01097	Related to SFH1 subunit of the RSC complex. (580 aa)
	FFUJ_00485	Uncharacterized protein. (678 aa)
	FFUJ_04662	Probable ARP5-Actin-related protein; Belongs to the actin family. (749 aa)
	FFUJ_04976	Related to actin-related protein; Belongs to the actin family. (785 aa)
	FFUJ_03111	HMG box domain-containing protein. (269 aa)
	FFUJ_04660	Probable IES6 INO80 chromatin remodeling complex subunit 6. (187 aa)
	FFUJ_03151	Probable component of SWI/SNF global transcription activator complex. (1421 aa)
	FFUJ_03316	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (741 aa)
	FFUJ_04361	Related to Los1p. (938 aa)
	FFUJ_02630	Related to Dictyostelium protein kinase. (657 aa)
	FFUJ_02908	Related to transcription factor snf5p. (704 aa)
	FFUJ_12033	Related to transcription activator protein acu-15. (717 aa)
	FFUJ_13385	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (458 aa)
	FFUJ_03137	Related to human AF-9 protein. (268 aa)
	FFUJ_13661	Related to member of RSC complex. (936 aa)
	FFUJ_13493	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (473 aa)
	FFUJ_02431	Uncharacterized protein. (205 aa)
	FFUJ_13265	Related to SWI1 Component of SWI/SNF global transcription activator complex. (1023 aa)
	FFUJ_07909	YL1_C domain-containing protein. (849 aa)
	FFUJ_07229	Probable ATPase component of chromatin remodeling complex (ISW1). (1116 aa)
	FFUJ_07346	Related to MUC1 Extracellular alpha-1,4-glucan glucosidase. (274 aa)
	FFUJ_05993	Uncharacterized protein. (534 aa)
	FFUJ_08487	Related to SWI/SNF complex 60 kDa subunit. (500 aa)
	FFUJ_01300	Uncharacterized protein. (703 aa)
	FFUJ_01385	Related to nuclear localization protein NPL6. (503 aa)
	FFUJ_01375	Related to nuclear localization protein NPL6. (633 aa)
	FFUJ_08137	Uncharacterized protein. (142 aa)
	FFUJ_13981	Uncharacterized protein. (364 aa)
	FFUJ_14054	Related to transcription activator protein acu-15. (621 aa)
	FFUJ_12249	Related to nucleosome remodeling complex subunit RSC8. (668 aa)
	FFUJ_06545	Related to actin-like protein; Belongs to the actin family. (446 aa)

Your Current Organism:

Fusarium fujikuroi

NCBI taxonomy Id: 1279085
Other names: F. fujikuroi IMI 58289, Fusarium fujikuroi IMI 58289, Fusarium fujikuroi IMI58289, Gibberella fujikuroi IMI 58289

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FFUJ_00485	FFUJ_01097	S0DNC8	S0DIP2	Uncharacterized protein.	Related to SFH1 subunit of the RSC complex.	0.977
FFUJ_00485	FFUJ_01375	S0DNC8	S0DIP1	Uncharacterized protein.	Related to nuclear localization protein NPL6.	0.676
FFUJ_00485	FFUJ_01385	S0DNC8	S0DIN6	Uncharacterized protein.	Related to nuclear localization protein NPL6.	0.783
FFUJ_00485	FFUJ_02431	S0DNC8	S0DYE4	Uncharacterized protein.	Uncharacterized protein.	0.546
FFUJ_00485	FFUJ_02908	S0DNC8	S0DWY8	Uncharacterized protein.	Related to transcription factor snf5p.	0.982
FFUJ_00485	FFUJ_03111	S0DNC8	S0DU61	Uncharacterized protein.	HMG box domain-containing protein.	0.507
FFUJ_00485	FFUJ_03151	S0DNC8	S0DUK8	Uncharacterized protein.	Probable component of SWI/SNF global transcription activator complex.	0.982
FFUJ_00485	FFUJ_03316	S0DNC8	S0DV07	Uncharacterized protein.	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.	0.762
FFUJ_00485	FFUJ_04361	S0DNC8	S0DV90	Uncharacterized protein.	Related to Los1p.	0.935
FFUJ_00485	FFUJ_04976	S0DNC8	S0DTF2	Uncharacterized protein.	Related to actin-related protein; Belongs to the actin family.	0.947
FFUJ_00485	FFUJ_05993	S0DNC8	S0E8G5	Uncharacterized protein.	Uncharacterized protein.	0.546
FFUJ_00485	FFUJ_07229	S0DNC8	S0E442	Uncharacterized protein.	Probable ATPase component of chromatin remodeling complex (ISW1).	0.719
FFUJ_00485	FFUJ_08137	S0DNC8	S0EA46	Uncharacterized protein.	Uncharacterized protein.	0.546
FFUJ_00485	FFUJ_08487	S0DNC8	S0E986	Uncharacterized protein.	Related to SWI/SNF complex 60 kDa subunit.	0.982
FFUJ_00485	FFUJ_11102	S0DNC8	S0EMC8	Uncharacterized protein.	Related to transcription activator protein acu-15.	0.554
FFUJ_00485	FFUJ_12033	S0DNC8	S0ENX7	Uncharacterized protein.	Related to transcription activator protein acu-15.	0.554
FFUJ_00485	FFUJ_12249	S0DNC8	S0EDU4	Uncharacterized protein.	Related to nucleosome remodeling complex subunit RSC8.	0.985
FFUJ_00485	FFUJ_13265	S0DNC8	S0E0B8	Uncharacterized protein.	Related to SWI1 Component of SWI/SNF global transcription activator complex.	0.647
FFUJ_00485	FFUJ_13981	S0DNC8	S0EAW6	Uncharacterized protein.	Uncharacterized protein.	0.546
FFUJ_00485	FFUJ_14054	S0DNC8	S0EDN1	Uncharacterized protein.	Related to transcription activator protein acu-15.	0.554