STRINGSTRING
PAN2 PAN2 FFUJ_01879 FFUJ_01879 FFUJ_01376 FFUJ_01376 FFUJ_01448 FFUJ_01448 FFUJ_00900 FFUJ_00900 FFUJ_01279 FFUJ_01279 FFUJ_05238 FFUJ_05238 USB1 USB1 FFUJ_04008 FFUJ_04008 FFUJ_02845 FFUJ_02845 FFUJ_03051 FFUJ_03051 FFUJ_03071 FFUJ_03071 FFUJ_13241 FFUJ_13241 FFUJ_13702 FFUJ_13702 FFUJ_02621 FFUJ_02621 FFUJ_07502 FFUJ_07502 FFUJ_05717 FFUJ_05717 FFUJ_05919 FFUJ_05919 FFUJ_06167 FFUJ_06167 FFUJ_06513 FFUJ_06513 FFUJ_08644 FFUJ_08644 FFUJ_08940 FFUJ_08940 FFUJ_08496 FFUJ_08496 FFUJ_08321 FFUJ_08321 FFUJ_13777 FFUJ_13777 FFUJ_09788 FFUJ_09788 FFUJ_09789 FFUJ_09789 FFUJ_08698 FFUJ_08698
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1087 aa)
FFUJ_01879Probable ATP dependent RNA helicase. (1039 aa)
FFUJ_01376Probable mitotic control protein dis3; Belongs to the RNR ribonuclease family. (961 aa)
FFUJ_01448Related to RNA-splicing regulatory protein phosphatase CYT-4, mitochondrial. (1029 aa)
FFUJ_00900Probable REX2-putative 3`-5` exonuclease. (214 aa)
FFUJ_01279Related to RRP46 protein, involved in rRNA processing. (250 aa)
FFUJ_05238Uncharacterized protein. (346 aa)
USB1U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (328 aa)
FFUJ_04008Related to 3`-5` exoribonuclease required for 3` end formation of 5.8S rRNA. (268 aa)
FFUJ_02845Related to SSD1 protein. (1361 aa)
FFUJ_03051Related to werner syndrome helicase. (543 aa)
FFUJ_030715'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1414 aa)
FFUJ_13241Related to nucleolar 100K polymyositis-scleroderma protein. (811 aa)
FFUJ_13702Endo/exonuclease/phosphatase domain-containing protein. (310 aa)
FFUJ_02621Probable CSL4-core component of the 3`-5` exosome. (208 aa)
FFUJ_07502Related to 3`->5` exoribonuclease. (333 aa)
FFUJ_05717Related to small unique nuclear receptor co-repressor. (185 aa)
FFUJ_05919Related to exosome complex exonuclease. (333 aa)
FFUJ_06167annotation not available (245 aa)
FFUJ_06513Uncharacterized protein. (433 aa)
FFUJ_08644Probable rRNA processing protein. (293 aa)
FFUJ_08940Related to ATP dependent RNA helicase. (761 aa)
FFUJ_084965'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (989 aa)
FFUJ_08321Related to rRNA processing protein. (339 aa)
FFUJ_13777Related to CCR4 protein. (698 aa)
FFUJ_09788F-box domain-containing protein. (431 aa)
FFUJ_09789Probable BRX1 Nucleolar protein involved in the assembly of the large ribosomal subunit. (307 aa)
FFUJ_08698Related to POP2-required for glucose derepression. (484 aa)
Your Current Organism:
Fusarium fujikuroi
NCBI taxonomy Id: 1279085
Other names: F. fujikuroi IMI 58289, Fusarium fujikuroi IMI 58289, Fusarium fujikuroi IMI58289, Gibberella fujikuroi IMI 58289
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