STRINGSTRING
FFUJ_04334 FFUJ_04334 FFUJ_09831 FFUJ_09831 FFUJ_08658 FFUJ_08658 FFUJ_08698 FFUJ_08698 FFUJ_09719 FFUJ_09719 FFUJ_09735 FFUJ_09735 LSM1 LSM1 FFUJ_08411 FFUJ_08411 FFUJ_08535 FFUJ_08535 FFUJ_13833 FFUJ_13833 FFUJ_08321 FFUJ_08321 FFUJ_08644 FFUJ_08644 PAN2 PAN2 FFUJ_06513 FFUJ_06513 FFUJ_06167 FFUJ_06167 FFUJ_06037 FFUJ_06037 LSM3 LSM3 FFUJ_05919 FFUJ_05919 PAN3 PAN3 FFUJ_05597 FFUJ_05597 FFUJ_05641 FFUJ_05641 FFUJ_07095 FFUJ_07095 FFUJ_13227 FFUJ_13227 FFUJ_07502 FFUJ_07502 FFUJ_13559 FFUJ_13559 FFUJ_02621 FFUJ_02621 LSM5 LSM5 LSM4 LSM4 FFUJ_02845 FFUJ_02845 FFUJ_04008 FFUJ_04008 FFUJ_04843 FFUJ_04843 FFUJ_00347 FFUJ_00347 FFUJ_04134 FFUJ_04134 FFUJ_04176 FFUJ_04176 FFUJ_00976 FFUJ_00976 FFUJ_04690 FFUJ_04690 FFUJ_05019 FFUJ_05019 FFUJ_05238 FFUJ_05238 FFUJ_01279 FFUJ_01279 FFUJ_00869 FFUJ_00869 FFUJ_01448 FFUJ_01448 FFUJ_01570 FFUJ_01570 FFUJ_01376 FFUJ_01376 FFUJ_02057 FFUJ_02057
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
FFUJ_04334Related to translation elongation factor HBS1 protein. (794 aa)
FFUJ_09831Uncharacterized protein. (260 aa)
FFUJ_08658Related to YjeF_N domain protein. (710 aa)
FFUJ_08698Related to POP2-required for glucose derepression. (484 aa)
FFUJ_09719Related to caffeine-induced death protein 1 Cid1. (1055 aa)
FFUJ_09735Related to 3' exoribonuclease family protein. (283 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (169 aa)
FFUJ_08411Probable ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family. (523 aa)
FFUJ_08535Related to decapping enzyme. (833 aa)
FFUJ_13833Uncharacterized protein. (219 aa)
FFUJ_08321Related to rRNA processing protein. (339 aa)
FFUJ_08644Probable rRNA processing protein. (293 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1087 aa)
FFUJ_06513Uncharacterized protein. (433 aa)
FFUJ_06167annotation not available (245 aa)
FFUJ_06037Related to CDC39 protein. (2170 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
FFUJ_05919Related to exosome complex exonuclease. (333 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (672 aa)
FFUJ_05597Probable SKI2-antiviral protein and putative helicase. (1275 aa)
FFUJ_05641Related to snRNP protein. (133 aa)
FFUJ_07095Related to NOT3-general negative regulator of transcription, subunit 3. (609 aa)
FFUJ_13227Related to GTP-binding protein beta subunit-like protein. (408 aa)
FFUJ_07502Related to 3`->5` exoribonuclease. (333 aa)
FFUJ_13559Related to SKI3-antiviral protein. (1421 aa)
FFUJ_02621Probable CSL4-core component of the 3`-5` exosome. (208 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (123 aa)
FFUJ_02845Related to SSD1 protein. (1361 aa)
FFUJ_04008Related to 3`-5` exoribonuclease required for 3` end formation of 5.8S rRNA. (268 aa)
FFUJ_04843Related to topoisomerase II-associated protein. (816 aa)
FFUJ_00347Probable polynucleotide adenylyltransferase. (1281 aa)
FFUJ_04134Probable rcd1 protein involved in sexual development. (363 aa)
FFUJ_04176Probable MOT2-transcriptional repressor. (1548 aa)
FFUJ_00976Related to LSM6-Sm-like (Lsm) protein. (83 aa)
FFUJ_04690Related to histidine triad protein member. (328 aa)
FFUJ_05019Related to cell division control protein CDC36. (465 aa)
FFUJ_05238Uncharacterized protein. (346 aa)
FFUJ_01279Related to RRP46 protein, involved in rRNA processing. (250 aa)
FFUJ_00869U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (120 aa)
FFUJ_01448Related to RNA-splicing regulatory protein phosphatase CYT-4, mitochondrial. (1029 aa)
FFUJ_01570Uncharacterized protein. (309 aa)
FFUJ_01376Probable mitotic control protein dis3; Belongs to the RNR ribonuclease family. (961 aa)
FFUJ_02057Uncharacterized protein. (310 aa)
Your Current Organism:
Fusarium fujikuroi
NCBI taxonomy Id: 1279085
Other names: F. fujikuroi IMI 58289, Fusarium fujikuroi IMI 58289, Fusarium fujikuroi IMI58289, Gibberella fujikuroi IMI 58289
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