STRINGSTRING
FFUJ_03914 FFUJ_03914 FFUJ_01846 FFUJ_01846 FFUJ_01657 FFUJ_01657 FFUJ_01565 FFUJ_01565 FFUJ_01305 FFUJ_01305 FFUJ_01320 FFUJ_01320 FFUJ_01314 FFUJ_01314 FFUJ_00985 FFUJ_00985 FFUJ_01182 FFUJ_01182 FFUJ_01119 FFUJ_01119 FFUJ_00711 FFUJ_00711 FFUJ_00929 FFUJ_00929 FFUJ_00590 FFUJ_00590 FFUJ_01138 FFUJ_01138 FFUJ_01036 FFUJ_01036 FFUJ_00114 FFUJ_00114 FFUJ_05285 FFUJ_05285 FFUJ_00736 FFUJ_00736 FFUJ_00679 FFUJ_00679 FFUJ_04765 FFUJ_04765 FFUJ_00509 FFUJ_00509 FFUJ_04750 FFUJ_04750 FFUJ_04541 FFUJ_04541 FFUJ_04921 FFUJ_04921 FFUJ_04052 FFUJ_04052 FFUJ_01413 FFUJ_01413 FFUJ_02392 FFUJ_02392 FFUJ_04255 FFUJ_04255 FFUJ_02496 FFUJ_02496 FFUJ_02535 FFUJ_02535 FFUJ_02618 FFUJ_02618 FFUJ_02915 FFUJ_02915 FFUJ_03168 FFUJ_03168 FFUJ_03180 FFUJ_03180 FFUJ_03666 FFUJ_03666 FFUJ_13236 FFUJ_13236 FFUJ_13459 FFUJ_13459 FFUJ_03301 FFUJ_03301 FFUJ_03478 FFUJ_03478 FFUJ_02510 FFUJ_02510 FFUJ_03053 FFUJ_03053 FFUJ_13195 FFUJ_13195 FFUJ_07406 FFUJ_07406 FFUJ_07543 FFUJ_07543 FFUJ_13015 FFUJ_13015 FFUJ_07996 FFUJ_07996 FFUJ_07907 FFUJ_07907 FFUJ_05579 FFUJ_05579 FFUJ_06349 FFUJ_06349 FFUJ_06086 FFUJ_06086 FFUJ_08952 FFUJ_08952 FFUJ_06391 FFUJ_06391 FFUJ_07370 FFUJ_07370 FFUJ_07556 FFUJ_07556 FFUJ_06127 FFUJ_06127 FFUJ_08623 FFUJ_08623 FFUJ_13897 FFUJ_13897 FFUJ_08870 FFUJ_08870 FFUJ_12219 FFUJ_12219 FFUJ_12393 FFUJ_12393 FFUJ_13741 FFUJ_13741 FFUJ_06034 FFUJ_06034 FFUJ_08341 FFUJ_08341 FFUJ_12252 FFUJ_12252 FFUJ_09731 FFUJ_09731 FFUJ_09720 FFUJ_09720 FFUJ_09462 FFUJ_09462 FFUJ_09754 FFUJ_09754 FFUJ_09769 FFUJ_09769 FFUJ_10044 FFUJ_10044 FFUJ_14218 FFUJ_14218 FFUJ_14219 FFUJ_14219
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
FFUJ_03914Related to TFB3-TFIIH subunit (Transcription/repair factor). (363 aa)
FFUJ_01846Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (188 aa)
FFUJ_01657Probable DNA-directed RNA polymerase II chain RPB3. (340 aa)
FFUJ_01565Related to nasopharyngeal carcinoma susceptibility protein LZ16. (717 aa)
FFUJ_01305Related to transcription initiation factor TFIIF subunit. (369 aa)
FFUJ_01320Related to TPR domain protein. (373 aa)
FFUJ_01314Related to DNA-directed RNA polymerase II chain. (158 aa)
FFUJ_00985Related to C-type cyclin; Belongs to the cyclin family. (443 aa)
FFUJ_01182Related to transcription initiation factor TFIID subunit. (493 aa)
FFUJ_01119Probable transcription initiation factor IIB. (322 aa)
FFUJ_00711Probable DNA-directed RNA polymerase II chain RPB10. (80 aa)
FFUJ_00929Uncharacterized protein. (458 aa)
FFUJ_00590Related to transcription factor TFIIA-L. (400 aa)
FFUJ_01138Uncharacterized protein. (697 aa)
FFUJ_01036Uncharacterized protein. (407 aa)
FFUJ_00114Uncharacterized protein. (2244 aa)
FFUJ_05285Uncharacterized protein. (1712 aa)
FFUJ_00736DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1750 aa)
FFUJ_00679Related to TFIID and SAGA subunit. (253 aa)
FFUJ_04765Uncharacterized protein. (380 aa)
FFUJ_00509Related to Het-c protein. (919 aa)
FFUJ_04750Probable DNA-directed RNA polymerase chain RPB5. (236 aa)
FFUJ_04541Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (115 aa)
FFUJ_04921Related to DNA-directed RNA polymerase II accessory protein. (409 aa)
FFUJ_04052Related to transcription initiation factor IID 250K chain splice form 2. (1301 aa)
FFUJ_01413Probable DNA-directed RNA polymerase II chain Rpb7. (172 aa)
FFUJ_02392Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1047 aa)
FFUJ_04255Related to TSM1-component of TFIID complex. (1499 aa)
FFUJ_02496Probable cyclin-dependent ser/thr protein kinase KIN28; Belongs to the protein kinase superfamily. (424 aa)
FFUJ_02535Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (123 aa)
FFUJ_02618Related to cap binding protein 80 (Cbp80). (797 aa)
FFUJ_02915Related to tetratricopeptide repeat protein tpr1. (1212 aa)
FFUJ_03168Related to DNA-directed RNA polymerase II regulator. (475 aa)
FFUJ_03180Probable DNA helicase RAD25. (825 aa)
FFUJ_03666Related to hard surface induced protein 3. (429 aa)
FFUJ_13236Related to general RNA polymerase II transcription factor TAF12. (688 aa)
FFUJ_13459Related to TFIID subunit TAF19. (163 aa)
FFUJ_03301Probable DNA-directed RNA polymerase I, II, III 18kD subunit. (154 aa)
FFUJ_03478Related to DNA-directed RNA polymerase II chain RPB9. (186 aa)
FFUJ_02510Related to cyclin dependent kinase C. (534 aa)
FFUJ_03053Related to DNA-directed RNA polymerase 13.3K chain. (136 aa)
FFUJ_13195General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (468 aa)
FFUJ_07406Probable transcription elongation complex subunit (CDC68). (1032 aa)
FFUJ_07543Related to Pol II transcription elongation factor. (598 aa)
FFUJ_13015Related to transcription initiation factor IID beta chain. (320 aa)
FFUJ_07996DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1270 aa)
FFUJ_07907FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (564 aa)
FFUJ_05579Transcription factor IWS1. (428 aa)
FFUJ_06349RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (496 aa)
FFUJ_06086Probable transcription initiation factor TFIID. (254 aa)
FFUJ_08952Related to TATA-binding protein-associated-factor. (463 aa)
FFUJ_06391GCR1_C domain-containing protein. (296 aa)
FFUJ_07370Probable RNA polymerase II transcription factor B subunit 5. (71 aa)
FFUJ_07556Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1406 aa)
FFUJ_06127Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (304 aa)
FFUJ_08623Nuclear cap-binding protein subunit 2. (173 aa)
FFUJ_13897Related to cyclin CCL1. (348 aa)
FFUJ_08870Related to CTK2 Carboxy-terminal domain (CTD) kinase, beta subunit. (419 aa)
FFUJ_12219Related to transcription initiation factor IIE chain TFA1. (375 aa)
FFUJ_12393RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (769 aa)
FFUJ_13741Related to transcription initiation factor tfiid 100 kDa subunit. (720 aa)
FFUJ_06034Uncharacterized protein. (578 aa)
FFUJ_08341Related to basic transcription factor 2 (35 kd SU). (358 aa)
FFUJ_12252Uncharacterized protein. (591 aa)
FFUJ_09731DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (148 aa)
FFUJ_09720Related to transcription initiation factor TFIIF large subunit. (665 aa)
FFUJ_09462Related to DNA-directed RNA polymerase small Zn-binding chain. (72 aa)
FFUJ_09754Probable excision repair protein rhp3. (786 aa)
FFUJ_09769Related to RNA polymerase II transcription factor. (643 aa)
FFUJ_10044Uncharacterized protein. (4489 aa)
FFUJ_14218Uncharacterized protein. (228 aa)
FFUJ_14219Uncharacterized protein. (146 aa)
Your Current Organism:
Fusarium fujikuroi
NCBI taxonomy Id: 1279085
Other names: F. fujikuroi IMI 58289, Fusarium fujikuroi IMI 58289, Fusarium fujikuroi IMI58289, Gibberella fujikuroi IMI 58289
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