STRINGSTRING
FFUJ_01657 FFUJ_01657 FFUJ_01305 FFUJ_01305 FFUJ_01314 FFUJ_01314 FFUJ_00711 FFUJ_00711 FFUJ_00929 FFUJ_00929 FFUJ_01138 FFUJ_01138 FFUJ_00736 FFUJ_00736 FFUJ_00509 FFUJ_00509 FFUJ_04750 FFUJ_04750 FFUJ_01413 FFUJ_01413 FFUJ_02392 FFUJ_02392 FFUJ_02496 FFUJ_02496 FFUJ_03914 FFUJ_03914 FFUJ_02911 FFUJ_02911 FFUJ_03180 FFUJ_03180 FFUJ_03301 FFUJ_03301 FFUJ_03478 FFUJ_03478 FFUJ_03053 FFUJ_03053 FFUJ_13195 FFUJ_13195 FFUJ_07996 FFUJ_07996 FFUJ_07438 FFUJ_07438 FFUJ_06349 FFUJ_06349 FFUJ_07370 FFUJ_07370 FFUJ_06066 FFUJ_06066 FFUJ_13897 FFUJ_13897 FFUJ_08341 FFUJ_08341 FFUJ_09731 FFUJ_09731 FFUJ_09720 FFUJ_09720 FFUJ_09596 FFUJ_09596 FFUJ_09462 FFUJ_09462 FFUJ_09754 FFUJ_09754 FFUJ_09769 FFUJ_09769 FFUJ_12706 FFUJ_12706 FFUJ_10044 FFUJ_10044
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
FFUJ_01657Probable DNA-directed RNA polymerase II chain RPB3. (340 aa)
FFUJ_01305Related to transcription initiation factor TFIIF subunit. (369 aa)
FFUJ_01314Related to DNA-directed RNA polymerase II chain. (158 aa)
FFUJ_00711Probable DNA-directed RNA polymerase II chain RPB10. (80 aa)
FFUJ_00929Uncharacterized protein. (458 aa)
FFUJ_01138Uncharacterized protein. (697 aa)
FFUJ_00736DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1750 aa)
FFUJ_00509Related to Het-c protein. (919 aa)
FFUJ_04750Probable DNA-directed RNA polymerase chain RPB5. (236 aa)
FFUJ_01413Probable DNA-directed RNA polymerase II chain Rpb7. (172 aa)
FFUJ_02392Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1047 aa)
FFUJ_02496Probable cyclin-dependent ser/thr protein kinase KIN28; Belongs to the protein kinase superfamily. (424 aa)
FFUJ_03914Related to TFB3-TFIIH subunit (Transcription/repair factor). (363 aa)
FFUJ_02911mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (389 aa)
FFUJ_03180Probable DNA helicase RAD25. (825 aa)
FFUJ_03301Probable DNA-directed RNA polymerase I, II, III 18kD subunit. (154 aa)
FFUJ_03478Related to DNA-directed RNA polymerase II chain RPB9. (186 aa)
FFUJ_03053Related to DNA-directed RNA polymerase 13.3K chain. (136 aa)
FFUJ_13195General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (468 aa)
FFUJ_07996DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1270 aa)
FFUJ_07438Methyltranfer_dom domain-containing protein. (279 aa)
FFUJ_06349RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (496 aa)
FFUJ_07370Probable RNA polymerase II transcription factor B subunit 5. (71 aa)
FFUJ_06066mRNA cap guanine-N7 methyltransferase. (477 aa)
FFUJ_13897Related to cyclin CCL1. (348 aa)
FFUJ_08341Related to basic transcription factor 2 (35 kd SU). (358 aa)
FFUJ_09731DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (148 aa)
FFUJ_09720Related to transcription initiation factor TFIIF large subunit. (665 aa)
FFUJ_09596Related to peroxisomal serine-active lipase. (634 aa)
FFUJ_09462Related to DNA-directed RNA polymerase small Zn-binding chain. (72 aa)
FFUJ_09754Probable excision repair protein rhp3. (786 aa)
FFUJ_09769Related to RNA polymerase II transcription factor. (643 aa)
FFUJ_12706Methyltransf_25 domain-containing protein. (255 aa)
FFUJ_10044Uncharacterized protein. (4489 aa)
Your Current Organism:
Fusarium fujikuroi
NCBI taxonomy Id: 1279085
Other names: F. fujikuroi IMI 58289, Fusarium fujikuroi IMI 58289, Fusarium fujikuroi IMI58289, Gibberella fujikuroi IMI 58289
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