(41 nodes) Nervous system development network (Fusarium fujikuroi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FFUJ_08260	Related to allantoinase. (530 aa)
	FFUJ_01668	Uncharacterized protein. (221 aa)
	FFUJ_00791	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (985 aa)
	SLX4	Structure-specific endonuclease subunit SLX4; Regulatory subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (890 aa)
	FFUJ_04770	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (719 aa)
	FFUJ_00142	Related to purine utilization positive regulator. (684 aa)
	FFUJ_04086	Related to Cutinase transcription factor 1 alpha. (878 aa)
	FFUJ_05027	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (143 aa)
	FFUJ_02145	Related to linoleate diol synthase. (444 aa)
	FFUJ_02276	Zn(2)-C6 fungal-type domain-containing protein. (516 aa)
	FFUJ_03059	Uncharacterized protein. (463 aa)
	FFUJ_04771	Ubiquitin-like domain-containing protein. (262 aa)
	FFUJ_03161	Probable MAP kinase kinase. (526 aa)
	FFUJ_03401	Uncharacterized protein. (424 aa)
	FFUJ_06863	Zn(2)-C6 fungal-type domain-containing protein. (495 aa)
	FFUJ_03276	PH domain-containing protein. (420 aa)
	FFUJ_13554	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (745 aa)
	FFUJ_07557	Probable MAP kinase kinase. (516 aa)
	FFUJ_14348	PH_9 domain-containing protein. (1157 aa)
	FFUJ_13623	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (355 aa)
	FFUJ_07171	Probable SnodProt1. (139 aa)
	FFUJ_05727	Probable GTP-binding protein rac1. (199 aa)
	FFUJ_06156	Related to component of actin cortical patches LAS17. (620 aa)
	FFUJ_06287	UBI4-Ubiquitin. (281 aa)
	FFUJ_05778	Related to cofilin; Belongs to the actin-binding proteins ADF family. (151 aa)
	FFUJ_06655	Related to PPR1-transcription factor regulating pyrimidine pathway. (644 aa)
	FFUJ_08756	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1683 aa)
	FFUJ_06204	Related to tyrosine protein kinase of the MAP kinase kinase family. (654 aa)
	FFUJ_05350	Uncharacterized protein. (184 aa)
	FFUJ_14068	Zn(2)-C6 fungal-type domain-containing protein. (510 aa)
	FFUJ_13848	Probable clathrin-associated adaptor complex medium chain; Belongs to the adaptor complexes medium subunit family. (436 aa)
	FFUJ_12203	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (238 aa)
	FFUJ_12507	Related to linoleate diol synthase. (449 aa)
	FFUJ_12936	Related to allantoinase. (501 aa)
	FFUJ_12939	DAL1-Allantoinase. (496 aa)
	FFUJ_09266	Related to Tryptophanase. (505 aa)
	FFUJ_12850	Probable PGU1-Endo-polygalacturonase. (374 aa)
	FFUJ_09987	Related to heterokaryon incompatibility protein (Het-6OR allele). (546 aa)
	FFUJ_10861	Related to heterokaryon incompatibility protein. (589 aa)
	FFUJ_10605	Related to heterokaryon incompatibility protein (Het-6OR allele). (618 aa)
	FFUJ_12938	Related to transcription activator protein acu-15. (777 aa)

Your Current Organism:

Fusarium fujikuroi

NCBI taxonomy Id: 1279085
Other names: F. fujikuroi IMI 58289, Fusarium fujikuroi IMI 58289, Fusarium fujikuroi IMI58289, Gibberella fujikuroi IMI 58289

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FFUJ_00791	FFUJ_04770	S0DJE5	S0DNA4	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.967
FFUJ_00791	FFUJ_04771	S0DJE5	S0DU44	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Ubiquitin-like domain-containing protein.	0.954
FFUJ_00791	FFUJ_05027	S0DJE5	S0DQX1	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.994
FFUJ_00791	FFUJ_05350	S0DJE5	S0EAF9	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Uncharacterized protein.	0.569
FFUJ_00791	FFUJ_06287	S0DJE5	S0E6L1	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	UBI4-Ubiquitin.	0.707
FFUJ_00791	FFUJ_08756	S0DJE5	S0E8H4	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.931
FFUJ_00791	FFUJ_12203	S0DJE5	S0EBM2	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.931
FFUJ_00791	FFUJ_13554	S0DJE5	S0E0Z9	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.947
FFUJ_00791	FFUJ_13623	S0DJE5	S0E3W7	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.569
FFUJ_00791	FFUJ_13848	S0DJE5	S0EB56	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Probable clathrin-associated adaptor complex medium chain; Belongs to the adaptor complexes medium subunit family.	0.994
FFUJ_01668	FFUJ_05350	S0DI68	S0EAF9	Uncharacterized protein.	Uncharacterized protein.	0.729
FFUJ_01668	FFUJ_05727	S0DI68	S0E4X4	Uncharacterized protein.	Probable GTP-binding protein rac1.	0.429
FFUJ_01668	FFUJ_13623	S0DI68	S0E3W7	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.729
FFUJ_03161	FFUJ_05350	S0DUL5	S0EAF9	Probable MAP kinase kinase.	Uncharacterized protein.	0.847
FFUJ_03161	FFUJ_05727	S0DUL5	S0E4X4	Probable MAP kinase kinase.	Probable GTP-binding protein rac1.	0.519
FFUJ_03161	FFUJ_06204	S0DUL5	S0E8Z6	Probable MAP kinase kinase.	Related to tyrosine protein kinase of the MAP kinase kinase family.	0.592
FFUJ_03161	FFUJ_07557	S0DUL5	S0E1J8	Probable MAP kinase kinase.	Probable MAP kinase kinase.	0.682
FFUJ_03161	FFUJ_13623	S0DUL5	S0E3W7	Probable MAP kinase kinase.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.881
FFUJ_03276	FFUJ_05727	S0E0P0	S0E4X4	PH domain-containing protein.	Probable GTP-binding protein rac1.	0.663
FFUJ_03276	FFUJ_06156	S0E0P0	S0E695	PH domain-containing protein.	Related to component of actin cortical patches LAS17.	0.490