STRINGSTRING
FFUJ_01272 FFUJ_01272 FFUJ_00869 FFUJ_00869 LSM8 LSM8 FFUJ_00721 FFUJ_00721 FFUJ_00471 FFUJ_00471 FFUJ_00867 FFUJ_00867 FFUJ_01584 FFUJ_01584 FFUJ_00976 FFUJ_00976 FFUJ_02836 FFUJ_02836 LSM4 LSM4 FFUJ_13157 FFUJ_13157 LSM5 LSM5 FFUJ_07660 FFUJ_07660 FFUJ_05641 FFUJ_05641 LSM3 LSM3 LSM1 LSM1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
FFUJ_01272Related to small nuclear ribonucleoprotein B. (204 aa)
FFUJ_00869U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (120 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
FFUJ_00721Sm domain-containing protein. (106 aa)
FFUJ_00471Small nuclear ribonucleoprotein G. (91 aa)
FFUJ_00867Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (123 aa)
FFUJ_01584Related to snRNP protein SMX3. (89 aa)
FFUJ_00976Related to LSM6-Sm-like (Lsm) protein. (83 aa)
FFUJ_02836Small nuclear ribonucleoprotein Sm D2. (118 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (123 aa)
FFUJ_13157Small nuclear ribonucleoprotein Sm D3. (115 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
FFUJ_07660Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
FFUJ_05641Related to snRNP protein. (133 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (169 aa)
Your Current Organism:
Fusarium fujikuroi
NCBI taxonomy Id: 1279085
Other names: F. fujikuroi IMI 58289, Fusarium fujikuroi IMI 58289, Fusarium fujikuroi IMI58289, Gibberella fujikuroi IMI 58289
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