(49 nodes) Mixed, incl. Organic substance transport, and Cytolysis network (Synechococcus sp. KORDI100)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AII41943.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (503 aa)
	AII41947.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (185 aa)
	AII42278.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyltransferase 26 family. (246 aa)
	AII42300.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (991 aa)
	AII42307.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (145 aa)
	AII42308.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (397 aa)
	AII42319.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (432 aa)
	trmB	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (234 aa)
	AII42321.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (418 aa)
	AII42322.1	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (203 aa)
	AII42323.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (99 aa)
	AII42325.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (266 aa)
	AII42369.1	AIR synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (108 aa)
	AII42370.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (568 aa)
	AII42374.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the OprB family. (542 aa)
	AII42386.1	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the OprB family. (537 aa)
	AII42637.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (123 aa)
	AII42663.1	VIC family potassium channel protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (355 aa)
	AII42664.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (260 aa)
	AII42905.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (228 aa)
	AII43099.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (253 aa)
	AII43132.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (281 aa)
	AII43224.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (374 aa)
	AII43233.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (331 aa)
	AII43250.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (440 aa)
	AII43251.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (219 aa)
	AII43252.1	Permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (320 aa)
	AII43253.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (112 aa)
	AII43357.1	Endolysin; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (185 aa)
	AII43412.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (339 aa)
	AII43413.1	Hypothetical protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (166 aa)
	pcxA	Proton extrusion protein PcxA; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the CemA family. (382 aa)
	AII43416.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (226 aa)
	AII43417.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (135 aa)
	AII43418.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (80 aa)
	AII43421.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (391 aa)
	AII43432.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (516 aa)
	AII43453.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (435 aa)
	AII43454.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (169 aa)
	AII43500.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (353 aa)
	AII43730.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (367 aa)
	AII43869.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (222 aa)
	AII43932.1	Plasmid partitioning protein ParB; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (229 aa)
	AII44249.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (446 aa)
	AII44479.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (65 aa)
	AII44537.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (595 aa)
	AII44587.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the OprB family. (569 aa)
	AII44588.1	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the OprB family. (523 aa)
	AII44695.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial secretin family. (761 aa)

Your Current Organism:

Synechococcus sp. KORDI100

NCBI taxonomy Id: 1280380
Other names: S. sp. KORDI-100, Synechococcus sp. KORDI-100

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AII41943.1	AII41947.1	KR100_00790	KR100_00810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.699
AII41943.1	AII42300.1	KR100_00790	KR100_02650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.736
AII41943.1	AII42322.1	KR100_00790	KR100_02770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.400
AII41943.1	AII42374.1	KR100_00790	KR100_03060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the OprB family.	0.665
AII41943.1	AII42664.1	KR100_00790	KR100_04690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.686
AII41943.1	AII42905.1	KR100_00790	KR100_05925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.620
AII41943.1	AII43099.1	KR100_00790	KR100_06935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.652
AII41943.1	AII43250.1	KR100_00790	KR100_07730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.722
AII41943.1	AII43251.1	KR100_00790	KR100_07735	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.406
AII41943.1	AII43357.1	KR100_00790	KR100_08285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Endolysin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.648
AII41943.1	AII43417.1	KR100_00790	KR100_08595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.400
AII41943.1	AII43421.1	KR100_00790	KR100_08615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.660
AII41943.1	AII43432.1	KR100_00790	KR100_08670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.656
AII41943.1	AII43454.1	KR100_00790	KR100_08780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.520
AII41943.1	AII43869.1	KR100_00790	KR100_10920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.577
AII41943.1	AII43932.1	KR100_00790	KR100_11245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Plasmid partitioning protein ParB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.553
AII41943.1	AII44479.1	KR100_00790	KR100_14095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.515
AII41943.1	AII44587.1	KR100_00790	KR100_14665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the OprB family.	0.467
AII41943.1	AII44588.1	KR100_00790	KR100_14670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Porin; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the OprB family.	0.574
AII41943.1	pcxA	KR100_00790	KR100_08585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Proton extrusion protein PcxA; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the CemA family.	0.417