(31 nodes) Mixed, incl. Gated channel activity, and Ion channel network (Synechococcus sp. KORDI100)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AII41809.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (437 aa)
	AII42155.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (279 aa)
	AII42405.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (262 aa)
	AII42581.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (104 aa)
	AII42582.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (75 aa)
	AII42583.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (179 aa)
	AII42930.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (360 aa)
	AII42931.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (39 aa)
	AII42933.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (474 aa)
	AII42978.1	Small mechanosensitive ion channel protein MscS; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (339 aa)
	AII42979.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (213 aa)
	AII42980.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (113 aa)
	AII43121.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (226 aa)
	AII43122.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (53 aa)
	AII43123.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (728 aa)
	AII43124.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (46 aa)
	AII43125.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (34 aa)
	AII43126.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (64 aa)
	AII43127.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (49 aa)
	AII43340.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (90 aa)
	AII43343.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (252 aa)
	AII43865.1	Cation transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (314 aa)
	AII43866.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (175 aa)
	AII43867.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (188 aa)
	trpS	tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (337 aa)
	AII44154.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (529 aa)
	AII44155.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (76 aa)
	AII44156.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (534 aa)
	AII44157.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (59 aa)
	AII44481.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (631 aa)
	AII44482.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (115 aa)

Your Current Organism:

Synechococcus sp. KORDI100

NCBI taxonomy Id: 1280380
Other names: S. sp. KORDI-100, Synechococcus sp. KORDI-100

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AII41809.1	AII43123.1	KR100_00095	KR100_07055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.441
AII42155.1	AII42930.1	KR100_01880	KR100_06060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.428
AII42155.1	AII43343.1	KR100_01880	KR100_08210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
AII42405.1	AII42930.1	KR100_03220	KR100_06060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.437
AII42581.1	AII42582.1	KR100_04270	KR100_04275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AII42581.1	AII42583.1	KR100_04270	KR100_04280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.547
AII42582.1	AII42581.1	KR100_04275	KR100_04270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AII42582.1	AII42583.1	KR100_04275	KR100_04280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.547
AII42583.1	AII42581.1	KR100_04280	KR100_04270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.547
AII42583.1	AII42582.1	KR100_04280	KR100_04275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.547
AII42930.1	AII42155.1	KR100_06060	KR100_01880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.428
AII42930.1	AII42405.1	KR100_06060	KR100_03220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.437
AII42930.1	AII42931.1	KR100_06060	KR100_06065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.518
AII42930.1	AII43343.1	KR100_06060	KR100_08210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.502
AII42931.1	AII42930.1	KR100_06065	KR100_06060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.518
AII42931.1	AII42933.1	KR100_06065	KR100_06075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.462
AII42933.1	AII42931.1	KR100_06075	KR100_06065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.462
AII42978.1	AII42979.1	KR100_06305	KR100_06310	Small mechanosensitive ion channel protein MscS; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.623
AII42978.1	AII42980.1	KR100_06305	KR100_06315	Small mechanosensitive ion channel protein MscS; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.623
AII42978.1	AII43123.1	KR100_06305	KR100_07055	Small mechanosensitive ion channel protein MscS; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.717