(72 nodes) Helicase, C-terminal network (Stachybotrys chlorohalonata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S40285_04729	Uncharacterized protein. (1483 aa)
	S40285_04832	RNA helicase. (631 aa)
	S40285_04826	Uncharacterized protein. (795 aa)
	S40285_05785	Uncharacterized protein. (1454 aa)
	S40285_02728	Uncharacterized protein; Belongs to the DEAD box helicase family. (439 aa)
	S40285_07615	Uncharacterized protein; Belongs to the DEAD box helicase family. (660 aa)
	S40285_02168	Uncharacterized protein. (890 aa)
	S40285_02172	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (482 aa)
	S40285_06443	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1412 aa)
	S40285_03423	Uncharacterized protein; Belongs to the DEAD box helicase family. (397 aa)
	S40285_03430	Uncharacterized protein. (922 aa)
	S40285_03414	Uncharacterized protein; Belongs to the DEAD box helicase family. (721 aa)
	S40285_03999	Uncharacterized protein. (1152 aa)
	S40285_07833	Uncharacterized protein. (776 aa)
	S40285_05604	Uncharacterized protein. (1277 aa)
	S40285_02823	ATP-dependent RNA helicase DBP10. (894 aa)
	S40285_01700	Uncharacterized protein. (1223 aa)
	S40285_05692	Uncharacterized protein. (1634 aa)
	S40285_05808	Uncharacterized protein. (1771 aa)
	S40285_03798	Uncharacterized protein. (1115 aa)
	S40285_08178	Uncharacterized protein. (1012 aa)
	S40285_02277	RNA helicase. (590 aa)
	S40285_02262	Uncharacterized protein. (1056 aa)
	S40285_04391	Uncharacterized protein; Belongs to the DEAD box helicase family. (753 aa)
	S40285_04786	Uncharacterized protein. (1864 aa)
	S40285_03292	Uncharacterized protein. (1569 aa)
	S40285_06592	Uncharacterized protein. (1896 aa)
	S40285_00288	Uncharacterized protein. (616 aa)
	S40285_04213	Uncharacterized protein. (433 aa)
	S40285_00852	Uncharacterized protein. (2201 aa)
	S40285_04565	Uncharacterized protein; Belongs to the DEAD box helicase family. (562 aa)
	S40285_08471	Uncharacterized protein. (1647 aa)
	S40285_07136	Uncharacterized protein; Belongs to the DEAD box helicase family. (489 aa)
	S40285_01389	Uncharacterized protein. (1192 aa)
	S40285_02851	RNA helicase. (803 aa)
	S40285_02857	Uncharacterized protein. (874 aa)
	S40285_02877	Uncharacterized protein. (1195 aa)
	S40285_03882	Uncharacterized protein. (2133 aa)
	S40285_03136	Uncharacterized protein. (1048 aa)
	S40285_02666	Uncharacterized protein. (1132 aa)
	S40285_00498	Uncharacterized protein. (1156 aa)
	S40285_03233	Uncharacterized protein. (703 aa)
	S40285_02372	Uncharacterized protein; Belongs to the DEAD box helicase family. (483 aa)
	S40285_09484	Uncharacterized protein. (1326 aa)
	S40285_08044	Uncharacterized protein. (805 aa)
	S40285_03717	Uncharacterized protein. (1140 aa)
	S40285_03704	Uncharacterized protein. (620 aa)
	S40285_01863	Uncharacterized protein. (1255 aa)
	S40285_05150	Uncharacterized protein; Belongs to the DEAD box helicase family. (520 aa)
	S40285_09151	Uncharacterized protein. (994 aa)
	S40285_04258	Uncharacterized protein. (1657 aa)
	S40285_00953	Uncharacterized protein. (673 aa)
	S40285_00932	Uncharacterized protein; Belongs to the DEAD box helicase family. (748 aa)
	S40285_00998	Uncharacterized protein. (974 aa)
	S40285_00980	Uncharacterized protein. (1119 aa)
	S40285_03520	Uncharacterized protein. (775 aa)
	S40285_03560	Uncharacterized protein. (1001 aa)
	S40285_01572	Uncharacterized protein; Belongs to the DEAD box helicase family. (700 aa)
	S40285_02649	Uncharacterized protein. (678 aa)
	S40285_01177	Uncharacterized protein. (824 aa)
	S40285_01191	Uncharacterized protein. (1795 aa)
	S40285_01148	Uncharacterized protein. (1437 aa)
	S40285_01157	Uncharacterized protein; Belongs to the DEAD box helicase family. (533 aa)
	S40285_00044	Uncharacterized protein. (1888 aa)
	S40285_01758	Uncharacterized protein. (1098 aa)
	S40285_07809	Uncharacterized protein; Belongs to the DEAD box helicase family. (590 aa)
	S40285_00646	Uncharacterized protein. (1065 aa)
	S40285_00649	Uncharacterized protein. (1710 aa)
	S40285_00557	Uncharacterized protein. (975 aa)
	S40285_08403	Uncharacterized protein. (1699 aa)
	S40285_07868	Uncharacterized protein. (1960 aa)
	S40285_07358	Uncharacterized protein; Belongs to the DEAD box helicase family. (609 aa)

Your Current Organism:

Stachybotrys chlorohalonata

NCBI taxonomy Id: 1283841
Other names: S. chlorohalonata IBT 40285, Stachybotrys chlorohalonata IBT 40285

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S40285_00044	S40285_01148	A0A084QZ21	A0A084QXT4	Uncharacterized protein.	Uncharacterized protein.	0.459
S40285_00044	S40285_01177	A0A084QZ21	A0A084QXR8	Uncharacterized protein.	Uncharacterized protein.	0.522
S40285_00044	S40285_02262	A0A084QZ21	A0A084QG08	Uncharacterized protein.	Uncharacterized protein.	0.414
S40285_00044	S40285_03136	A0A084QZ21	A0A084QM91	Uncharacterized protein.	Uncharacterized protein.	0.522
S40285_00044	S40285_06592	A0A084QZ21	A0A084QHH7	Uncharacterized protein.	Uncharacterized protein.	0.545
S40285_00044	S40285_08178	A0A084QZ21	A0A084QFW2	Uncharacterized protein.	Uncharacterized protein.	0.448
S40285_00288	S40285_00557	A0A084QHJ7	A0A084R2T6	Uncharacterized protein.	Uncharacterized protein.	0.522
S40285_00288	S40285_00852	A0A084QHJ7	A0A084QJI1	Uncharacterized protein.	Uncharacterized protein.	0.614
S40285_00288	S40285_00932	A0A084QHJ7	A0A084QUN1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.537
S40285_00288	S40285_00998	A0A084QHJ7	A0A084QUT6	Uncharacterized protein.	Uncharacterized protein.	0.466
S40285_00288	S40285_01700	A0A084QHJ7	A0A084QDS5	Uncharacterized protein.	Uncharacterized protein.	0.568
S40285_00288	S40285_01758	A0A084QHJ7	A0A084R276	Uncharacterized protein.	Uncharacterized protein.	0.643
S40285_00288	S40285_02277	A0A084QHJ7	A0A084QFY9	Uncharacterized protein.	RNA helicase.	0.476
S40285_00288	S40285_02649	A0A084QHJ7	A0A084QXH5	Uncharacterized protein.	Uncharacterized protein.	0.531
S40285_00288	S40285_02728	A0A084QHJ7	A0A084QAH9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.465
S40285_00288	S40285_02877	A0A084QHJ7	A0A084QLS3	Uncharacterized protein.	Uncharacterized protein.	0.531
S40285_00288	S40285_03233	A0A084QHJ7	A0A084QNL7	Uncharacterized protein.	Uncharacterized protein.	0.701
S40285_00288	S40285_03423	A0A084QHJ7	A0A084QBY6	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.631
S40285_00288	S40285_03560	A0A084QHJ7	A0A084QVL6	Uncharacterized protein.	Uncharacterized protein.	0.572
S40285_00288	S40285_03704	A0A084QHJ7	A0A084QQ23	Uncharacterized protein.	Uncharacterized protein.	0.442