(5 nodes) Nitric oxide metabolic process, and Nitrate assimilation network (Dactylellina haptotyla)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H072_11156	Uncharacterized protein. (703 aa)
	H072_10187	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. (879 aa)
	H072_3674	MOSC domain-containing protein. (386 aa)
	H072_3940	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (393 aa)
	H072_8102	Uncharacterized protein. (452 aa)

Your Current Organism:

Dactylellina haptotyla

NCBI taxonomy Id: 1284197
Other names: D. haptotyla CBS 200.50, Dactylellina haptotyla CBS 200.50, Monacrosporium haptotylum CBS 200.50

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H072_10187	H072_11156	S8A0W5	S7ZXK0	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Uncharacterized protein.	0.847
H072_10187	H072_3674	S8A0W5	S8AMP6	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	MOSC domain-containing protein.	0.986
H072_10187	H072_3940	S8A0W5	S8BRH5	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.948
H072_10187	H072_8102	S8A0W5	S8BSP3	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Uncharacterized protein.	0.724
H072_11156	H072_10187	S7ZXK0	S8A0W5	Uncharacterized protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.847
H072_11156	H072_3674	S7ZXK0	S8AMP6	Uncharacterized protein.	MOSC domain-containing protein.	0.581
H072_11156	H072_3940	S7ZXK0	S8BRH5	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.696
H072_3674	H072_10187	S8AMP6	S8A0W5	MOSC domain-containing protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.986
H072_3674	H072_11156	S8AMP6	S7ZXK0	MOSC domain-containing protein.	Uncharacterized protein.	0.581
H072_3674	H072_3940	S8AMP6	S8BRH5	MOSC domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.978
H072_3940	H072_10187	S8BRH5	S8A0W5	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.948
H072_3940	H072_11156	S8BRH5	S7ZXK0	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Uncharacterized protein.	0.696
H072_3940	H072_3674	S8BRH5	S8AMP6	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	MOSC domain-containing protein.	0.978
H072_3940	H072_8102	S8BRH5	S8BSP3	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Uncharacterized protein.	0.981
H072_8102	H072_10187	S8BSP3	S8A0W5	Uncharacterized protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.724
H072_8102	H072_3940	S8BSP3	S8BRH5	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.981