(5 nodes) Proteasome regulatory particle, lid subcomplex, and K48-linked polyubiquitin modification-dependent protein binding network (Neofusicoccum parvum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UCRNP2_7299	Putative 26s proteasome non-atpase regulatory subunit 11 protein. (425 aa)
	UCRNP2_7261	Putative 26s proteasome non-atpase regulatory subunit 12 protein. (492 aa)
	UCRNP2_1005	Putative 26s proteasome regulatory subunit rpn-8 protein. (361 aa)
	UCRNP2_2765	Putative 26s proteasome regulatory subunit s5a protein. (306 aa)
	UCRNP2_3985	Proteasome subunit alpha type. (259 aa)

Your Current Organism:

Neofusicoccum parvum

NCBI taxonomy Id: 1287680
Other names: N. parvum UCRNP2, Neofusicoccum parvum UCRNP2

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UCRNP2_1005	UCRNP2_2765	R1GKK1	R1GQE4	Putative 26s proteasome regulatory subunit rpn-8 protein.	Putative 26s proteasome regulatory subunit s5a protein.	0.999
UCRNP2_1005	UCRNP2_3985	R1GKK1	R1GT64	Putative 26s proteasome regulatory subunit rpn-8 protein.	Proteasome subunit alpha type.	0.999
UCRNP2_1005	UCRNP2_7261	R1GKK1	R1EE52	Putative 26s proteasome regulatory subunit rpn-8 protein.	Putative 26s proteasome non-atpase regulatory subunit 12 protein.	0.999
UCRNP2_1005	UCRNP2_7299	R1GKK1	R1EE28	Putative 26s proteasome regulatory subunit rpn-8 protein.	Putative 26s proteasome non-atpase regulatory subunit 11 protein.	0.999
UCRNP2_2765	UCRNP2_1005	R1GQE4	R1GKK1	Putative 26s proteasome regulatory subunit s5a protein.	Putative 26s proteasome regulatory subunit rpn-8 protein.	0.999
UCRNP2_2765	UCRNP2_3985	R1GQE4	R1GT64	Putative 26s proteasome regulatory subunit s5a protein.	Proteasome subunit alpha type.	0.999
UCRNP2_2765	UCRNP2_7261	R1GQE4	R1EE52	Putative 26s proteasome regulatory subunit s5a protein.	Putative 26s proteasome non-atpase regulatory subunit 12 protein.	0.999
UCRNP2_2765	UCRNP2_7299	R1GQE4	R1EE28	Putative 26s proteasome regulatory subunit s5a protein.	Putative 26s proteasome non-atpase regulatory subunit 11 protein.	0.999
UCRNP2_3985	UCRNP2_1005	R1GT64	R1GKK1	Proteasome subunit alpha type.	Putative 26s proteasome regulatory subunit rpn-8 protein.	0.999
UCRNP2_3985	UCRNP2_2765	R1GT64	R1GQE4	Proteasome subunit alpha type.	Putative 26s proteasome regulatory subunit s5a protein.	0.999
UCRNP2_3985	UCRNP2_7261	R1GT64	R1EE52	Proteasome subunit alpha type.	Putative 26s proteasome non-atpase regulatory subunit 12 protein.	0.999
UCRNP2_3985	UCRNP2_7299	R1GT64	R1EE28	Proteasome subunit alpha type.	Putative 26s proteasome non-atpase regulatory subunit 11 protein.	0.999
UCRNP2_7261	UCRNP2_1005	R1EE52	R1GKK1	Putative 26s proteasome non-atpase regulatory subunit 12 protein.	Putative 26s proteasome regulatory subunit rpn-8 protein.	0.999
UCRNP2_7261	UCRNP2_2765	R1EE52	R1GQE4	Putative 26s proteasome non-atpase regulatory subunit 12 protein.	Putative 26s proteasome regulatory subunit s5a protein.	0.999
UCRNP2_7261	UCRNP2_3985	R1EE52	R1GT64	Putative 26s proteasome non-atpase regulatory subunit 12 protein.	Proteasome subunit alpha type.	0.999
UCRNP2_7261	UCRNP2_7299	R1EE52	R1EE28	Putative 26s proteasome non-atpase regulatory subunit 12 protein.	Putative 26s proteasome non-atpase regulatory subunit 11 protein.	0.999
UCRNP2_7299	UCRNP2_1005	R1EE28	R1GKK1	Putative 26s proteasome non-atpase regulatory subunit 11 protein.	Putative 26s proteasome regulatory subunit rpn-8 protein.	0.999
UCRNP2_7299	UCRNP2_2765	R1EE28	R1GQE4	Putative 26s proteasome non-atpase regulatory subunit 11 protein.	Putative 26s proteasome regulatory subunit s5a protein.	0.999
UCRNP2_7299	UCRNP2_3985	R1EE28	R1GT64	Putative 26s proteasome non-atpase regulatory subunit 11 protein.	Proteasome subunit alpha type.	0.999
UCRNP2_7299	UCRNP2_7261	R1EE28	R1EE52	Putative 26s proteasome non-atpase regulatory subunit 11 protein.	Putative 26s proteasome non-atpase regulatory subunit 12 protein.	0.999