(10 nodes) Mixed, incl. Kelch-type beta propeller, and Fumarate transport network (Neofusicoccum parvum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UCRNP2_4277	Putative duf167 domain protein. (119 aa)
	UCRNP2_3580	Putative kelch repeat protein. (722 aa)
	UCRNP2_3390	Putative dead deah box helicase protein. (611 aa)
	UCRNP2_936	Putative nadh-ubiquinone oxidoreductase 213 kDa subunit protein. (192 aa)
	UCRNP2_6036	Putative kelch repeat protein. (554 aa)
	UCRNP2_1651	Putative succinate:fumarate antiporter protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (295 aa)
	UCRNP2_6198	Putative carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (320 aa)
	UCRNP2_3183	Putative translocator protein. (186 aa)
	UCRNP2_1030	Putative mitochondrial phosphate carrier protein 2 protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (385 aa)
	UCRNP2_948	Putative cell wall anchored protein. (352 aa)

Your Current Organism:

Neofusicoccum parvum

NCBI taxonomy Id: 1287680
Other names: N. parvum UCRNP2, Neofusicoccum parvum UCRNP2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UCRNP2_1030	UCRNP2_3390	R1H153	R1EQG6	Putative mitochondrial phosphate carrier protein 2 protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Putative dead deah box helicase protein.	0.470
UCRNP2_1030	UCRNP2_6198	R1H153	R1GM64	Putative mitochondrial phosphate carrier protein 2 protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Putative carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.571
UCRNP2_1651	UCRNP2_3390	R1GIR8	R1EQG6	Putative succinate:fumarate antiporter protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Putative dead deah box helicase protein.	0.411
UCRNP2_1651	UCRNP2_4277	R1GIR8	R1EMI2	Putative succinate:fumarate antiporter protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Putative duf167 domain protein.	0.404
UCRNP2_1651	UCRNP2_6198	R1GIR8	R1GM64	Putative succinate:fumarate antiporter protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Putative carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.411
UCRNP2_3183	UCRNP2_6198	R1GP29	R1GM64	Putative translocator protein.	Putative carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.584
UCRNP2_3390	UCRNP2_1030	R1EQG6	R1H153	Putative dead deah box helicase protein.	Putative mitochondrial phosphate carrier protein 2 protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.470
UCRNP2_3390	UCRNP2_1651	R1EQG6	R1GIR8	Putative dead deah box helicase protein.	Putative succinate:fumarate antiporter protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.411
UCRNP2_3390	UCRNP2_4277	R1EQG6	R1EMI2	Putative dead deah box helicase protein.	Putative duf167 domain protein.	0.582
UCRNP2_3390	UCRNP2_936	R1EQG6	R1EXC1	Putative dead deah box helicase protein.	Putative nadh-ubiquinone oxidoreductase 213 kDa subunit protein.	0.585
UCRNP2_4277	UCRNP2_1651	R1EMI2	R1GIR8	Putative duf167 domain protein.	Putative succinate:fumarate antiporter protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.404
UCRNP2_4277	UCRNP2_3390	R1EMI2	R1EQG6	Putative duf167 domain protein.	Putative dead deah box helicase protein.	0.582
UCRNP2_4277	UCRNP2_6198	R1EMI2	R1GM64	Putative duf167 domain protein.	Putative carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.582
UCRNP2_6198	UCRNP2_1030	R1GM64	R1H153	Putative carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Putative mitochondrial phosphate carrier protein 2 protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.571
UCRNP2_6198	UCRNP2_1651	R1GM64	R1GIR8	Putative carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Putative succinate:fumarate antiporter protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.411
UCRNP2_6198	UCRNP2_3183	R1GM64	R1GP29	Putative carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Putative translocator protein.	0.584
UCRNP2_6198	UCRNP2_4277	R1GM64	R1EMI2	Putative carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Putative duf167 domain protein.	0.582
UCRNP2_6198	UCRNP2_936	R1GM64	R1EXC1	Putative carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Putative nadh-ubiquinone oxidoreductase 213 kDa subunit protein.	0.585
UCRNP2_936	UCRNP2_3390	R1EXC1	R1EQG6	Putative nadh-ubiquinone oxidoreductase 213 kDa subunit protein.	Putative dead deah box helicase protein.	0.585
UCRNP2_936	UCRNP2_6198	R1EXC1	R1GM64	Putative nadh-ubiquinone oxidoreductase 213 kDa subunit protein.	Putative carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.585