(11 nodes) DNA replication factor C complex, and Regulation of DNA-directed DNA polymerase activity network (Eutypa lata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UCREL1_7679	Putative sister chromatid cohesion protein. (74 aa)
	UCREL1_8696	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family. (798 aa)
	UCREL1_5346	Putative chromosome transmission fidelity protein. (920 aa)
	UCREL1_11696	Putative activator 1 38 kDa subunit protein. (352 aa)
	UCREL1_11509	Putative activator 1 41 kDa subunit protein. (384 aa)
	UCREL1_1165	Putative sister chromatid cohesion protein eso1 protein. (283 aa)
	UCREL1_10018	Putative cell cycle checkpoint protein rad17 protein. (399 aa)
	UCREL1_7896	Putative replication factor c subunit 1 protein. (363 aa)
	UCREL1_3443	Putative replication factor c subunit 3 protein. (389 aa)
	UCREL1_5844	Replication factor C subunit 1. (1049 aa)
	UCREL1_1256	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (279 aa)

Your Current Organism:

Eutypa lata

NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UCREL1_10018	UCREL1_11509	M7T8R3	M7T4K5	Putative cell cycle checkpoint protein rad17 protein.	Putative activator 1 41 kDa subunit protein.	0.999
UCREL1_10018	UCREL1_1165	M7T8R3	M7T593	Putative cell cycle checkpoint protein rad17 protein.	Putative sister chromatid cohesion protein eso1 protein.	0.828
UCREL1_10018	UCREL1_11696	M7T8R3	M7SUU1	Putative cell cycle checkpoint protein rad17 protein.	Putative activator 1 38 kDa subunit protein.	0.999
UCREL1_10018	UCREL1_1256	M7T8R3	M7TYE2	Putative cell cycle checkpoint protein rad17 protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.783
UCREL1_10018	UCREL1_3443	M7T8R3	M7THV7	Putative cell cycle checkpoint protein rad17 protein.	Putative replication factor c subunit 3 protein.	0.999
UCREL1_10018	UCREL1_5346	M7T8R3	M7SMQ3	Putative cell cycle checkpoint protein rad17 protein.	Putative chromosome transmission fidelity protein.	0.873
UCREL1_10018	UCREL1_5844	M7T8R3	M7TKC9	Putative cell cycle checkpoint protein rad17 protein.	Replication factor C subunit 1.	0.896
UCREL1_10018	UCREL1_7679	M7T8R3	M7SGD1	Putative cell cycle checkpoint protein rad17 protein.	Putative sister chromatid cohesion protein.	0.738
UCREL1_10018	UCREL1_7896	M7T8R3	M7TEN0	Putative cell cycle checkpoint protein rad17 protein.	Putative replication factor c subunit 1 protein.	0.860
UCREL1_10018	UCREL1_8696	M7T8R3	M7SJ62	Putative cell cycle checkpoint protein rad17 protein.	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	0.999
UCREL1_11509	UCREL1_10018	M7T4K5	M7T8R3	Putative activator 1 41 kDa subunit protein.	Putative cell cycle checkpoint protein rad17 protein.	0.999
UCREL1_11509	UCREL1_1165	M7T4K5	M7T593	Putative activator 1 41 kDa subunit protein.	Putative sister chromatid cohesion protein eso1 protein.	0.987
UCREL1_11509	UCREL1_11696	M7T4K5	M7SUU1	Putative activator 1 41 kDa subunit protein.	Putative activator 1 38 kDa subunit protein.	0.999
UCREL1_11509	UCREL1_1256	M7T4K5	M7TYE2	Putative activator 1 41 kDa subunit protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.987
UCREL1_11509	UCREL1_3443	M7T4K5	M7THV7	Putative activator 1 41 kDa subunit protein.	Putative replication factor c subunit 3 protein.	0.999
UCREL1_11509	UCREL1_5346	M7T4K5	M7SMQ3	Putative activator 1 41 kDa subunit protein.	Putative chromosome transmission fidelity protein.	0.984
UCREL1_11509	UCREL1_5844	M7T4K5	M7TKC9	Putative activator 1 41 kDa subunit protein.	Replication factor C subunit 1.	0.987
UCREL1_11509	UCREL1_7679	M7T4K5	M7SGD1	Putative activator 1 41 kDa subunit protein.	Putative sister chromatid cohesion protein.	0.941
UCREL1_11509	UCREL1_7896	M7T4K5	M7TEN0	Putative activator 1 41 kDa subunit protein.	Putative replication factor c subunit 1 protein.	0.973
UCREL1_11509	UCREL1_8696	M7T4K5	M7SJ62	Putative activator 1 41 kDa subunit protein.	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	0.999