STRINGSTRING
UCREL1_11647 UCREL1_11647 UCREL1_8630 UCREL1_8630 UCREL1_9891 UCREL1_9891 UCREL1_9703 UCREL1_9703 UCREL1_9369 UCREL1_9369 UCREL1_6509 UCREL1_6509 UCREL1_7799 UCREL1_7799 UCREL1_7499 UCREL1_7499 UCREL1_4768 UCREL1_4768 UCREL1_3227 UCREL1_3227 UCREL1_4553 UCREL1_4553 UCREL1_2346 UCREL1_2346 UCREL1_3835 UCREL1_3835 UCREL1_1349 UCREL1_1349 UCREL1_1270 UCREL1_1270 UCREL1_1205 UCREL1_1205 UCREL1_11145 UCREL1_11145 UCREL1_223 UCREL1_223 UCREL1_113 UCREL1_113 UCREL1_8542 UCREL1_8542 UCREL1_4302 UCREL1_4302 UCREL1_6813 UCREL1_6813 UCREL1_2901 UCREL1_2901 UCREL1_5042 UCREL1_5042 UCREL1_3688 UCREL1_3688 UCREL1_1958 UCREL1_1958 UCREL1_375 UCREL1_375 UCREL1_380 UCREL1_380
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
UCREL1_11647Putative ctd kinase subunit gamma protein. (255 aa)
UCREL1_8630Putative transcription factor iws1 protein. (421 aa)
UCREL1_9891Putative rna polymerase rpb4 protein. (144 aa)
UCREL1_9703Putative transcription elongation factor s-ii protein. (299 aa)
UCREL1_9369Putative fact complex subunit spt-16 protein. (1031 aa)
UCREL1_6509Putative rna polymerase ii subunit 3 protein. (697 aa)
UCREL1_7799DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1259 aa)
UCREL1_7499Uncharacterized protein. (171 aa)
UCREL1_4768Putative rna polymerase ii-paf1 protein. (492 aa)
UCREL1_3227Putative duf408 domain-containing protein. (371 aa)
UCREL1_4553Putative tetratricopeptide repeat protein 1 protein. (1150 aa)
UCREL1_2346Putative cmgc cdk protein kinase protein. (538 aa)
UCREL1_3835RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (859 aa)
UCREL1_1349Putative rna polymerase ii-associated protein. (426 aa)
UCREL1_1270Putative ctd kinase subunit alpha protein. (658 aa)
UCREL1_1205DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1584 aa)
UCREL1_11145Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (127 aa)
UCREL1_223Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1036 aa)
UCREL1_113Uncharacterized protein. (561 aa)
UCREL1_8542Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1414 aa)
UCREL1_4302Putative rna polymerase 2 transcription elongation factor protein. (620 aa)
UCREL1_6813Putative c-type cyclin protein. (434 aa)
UCREL1_2901FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (594 aa)
UCREL1_5042Putative brct domain containing protein. (362 aa)
UCREL1_3688Putative rna polymerase-associated protein. (428 aa)
UCREL1_1958Putative cyclin-k protein. (344 aa)
UCREL1_375Putative dna-directed rna polymerase ii subunit rpb11 protein. (130 aa)
UCREL1_380Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (110 aa)
Your Current Organism:
Eutypa lata
NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1
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