17 items (Eutypa lata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UCREL1_11618	Putative 60s ribosomal protein l7 protein. (248 aa)
	UCREL1_9192	Putative 60s ribosomal protein l33 protein. (108 aa)
	UCREL1_9088	Putative 60s ribosomal protein l24 protein. (156 aa)
	UCREL1_5163	Putative 60s ribosomal protein l5 protein. (136 aa)
	UCREL1_10955	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	UCREL1_2531	Putative 60s ribosomal protein l3 protein; Belongs to the universal ribosomal protein uL3 family. (392 aa)
	UCREL1_11162	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (106 aa)
	UCREL1_7811	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (204 aa)
	UCREL1_565	Putative 60s acidic ribosomal protein p2 protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (111 aa)
	UCREL1_535	Putative 60s ribosomal protein l25 protein. (154 aa)
	UCREL1_10558	Putative 60s ribosomal protein l8 protein. (262 aa)
	UCREL1_10310	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family. (141 aa)
	UCREL1_3995	Putative 60s ribosomal protein l38 protein; Belongs to the eukaryotic ribosomal protein eL38 family. (82 aa)
	UCREL1_614	Putative 40s ribosomal protein s15 protein; Belongs to the universal ribosomal protein uS19 family. (154 aa)
	UCREL1_2146	Putative 40s ribosomal protein s19 protein. (151 aa)
	UCREL1_869	Putative 60s ribosomal protein l21 protein. (160 aa)
	UCREL1_593	Putative 60s ribosomal protein l6 protein. (200 aa)

Your Current Organism:

Eutypa lata

NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UCREL1_10310	UCREL1_10558	M7T7X4	M7T737	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 60s ribosomal protein l8 protein.	0.999
UCREL1_10310	UCREL1_10955	M7T7X4	M7SX42	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
UCREL1_10310	UCREL1_11162	M7T7X4	M7T5I7	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
UCREL1_10310	UCREL1_11618	M7T7X4	M7SB94	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 60s ribosomal protein l7 protein.	0.999
UCREL1_10310	UCREL1_2146	M7T7X4	M7TVY3	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 40s ribosomal protein s19 protein.	0.999
UCREL1_10310	UCREL1_2531	M7T7X4	M7T0S0	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 60s ribosomal protein l3 protein; Belongs to the universal ribosomal protein uL3 family.	0.999
UCREL1_10310	UCREL1_3995	M7T7X4	M7TGA6	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 60s ribosomal protein l38 protein; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999
UCREL1_10310	UCREL1_5163	M7T7X4	M7SU79	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 60s ribosomal protein l5 protein.	0.999
UCREL1_10310	UCREL1_535	M7T7X4	M7T6Y2	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 60s ribosomal protein l25 protein.	0.999
UCREL1_10310	UCREL1_565	M7T7X4	M7T6W1	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 60s acidic ribosomal protein p2 protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
UCREL1_10310	UCREL1_593	M7T7X4	M7U0A6	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 60s ribosomal protein l6 protein.	0.999
UCREL1_10310	UCREL1_614	M7T7X4	M7TQX8	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 40s ribosomal protein s15 protein; Belongs to the universal ribosomal protein uS19 family.	0.999
UCREL1_10310	UCREL1_7811	M7T7X4	M7T5Z0	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
UCREL1_10310	UCREL1_869	M7T7X4	M7TZI6	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 60s ribosomal protein l21 protein.	0.999
UCREL1_10310	UCREL1_9088	M7T7X4	M7SIF0	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 60s ribosomal protein l24 protein.	0.999
UCREL1_10310	UCREL1_9192	M7T7X4	M7SI62	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	Putative 60s ribosomal protein l33 protein.	0.999
UCREL1_10558	UCREL1_10310	M7T737	M7T7X4	Putative 60s ribosomal protein l8 protein.	Putative 40s ribosomal protein s16 protein; Belongs to the universal ribosomal protein uS9 family.	0.999
UCREL1_10558	UCREL1_10955	M7T737	M7SX42	Putative 60s ribosomal protein l8 protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
UCREL1_10558	UCREL1_11162	M7T737	M7T5I7	Putative 60s ribosomal protein l8 protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
UCREL1_10558	UCREL1_11618	M7T737	M7SB94	Putative 60s ribosomal protein l8 protein.	Putative 60s ribosomal protein l7 protein.	0.999