(49 nodes) Pentose phosphate pathway, and Glycolytic process network (Eutypa lata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UCREL1_9108	Putative xylulose-5-phosphate phosphoketolase protein. (693 aa)
	UCREL1_8308	Triosephosphate isomerase. (247 aa)
	UCREL1_10072	Putative phosphoenolpyruvate carboxykinase protein. (597 aa)
	UCREL1_7894	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily. (789 aa)
	UCREL1_7769	Uncharacterized protein. (207 aa)
	UCREL1_9325	Putative ribose 5-phosphate isomerase a protein. (290 aa)
	UCREL1_9305	Glucose-6-phosphate isomerase; Belongs to the GPI family. (344 aa)
	UCREL1_9191	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis. (504 aa)
	UCREL1_9086	Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. (288 aa)
	UCREL1_8456	Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. (320 aa)
	UCREL1_6247	Uncharacterized protein. (201 aa)
	UCREL1_7350	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (685 aa)
	UCREL1_4933	Uncharacterized protein. (489 aa)
	UCREL1_7079	Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. (334 aa)
	UCREL1_4539	6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. (261 aa)
	UCREL1_6357	Glyceraldehyde-3-phosphate dehydrogenase. (337 aa)
	UCREL1_6109	Putative uba ts-n domain containing protein. (771 aa)
	UCREL1_3713	Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. (547 aa)
	UCREL1_4680	Putative enolase protein. (438 aa)
	UCREL1_4635	Putative 6-phosphogluconate dehydrogenase protein. (527 aa)
	UCREL1_4330	Putative upf0075 domain protein. (441 aa)
	UCREL1_3870	Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. (184 aa)
	UCREL1_1178	6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (492 aa)
	UCREL1_1129	Uncharacterized protein. (665 aa)
	UCREL1_591	Gluconokinase; Belongs to the gluconokinase GntK/GntV family. (237 aa)
	UCREL1_2633	Glucose-6-phosphate isomerase; Belongs to the GPI family. (124 aa)
	UCREL1_9085	Putative dihydroxyacetone kinase protein. (590 aa)
	UCREL1_9084	Putative ribose 5-phosphate isomerase protein. (156 aa)
	UCREL1_2270	Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. (292 aa)
	UCREL1_1828	Putative 2-deoxy-d-gluconate 3-dehydrogenase protein. (262 aa)
	UCREL1_8834	Uncharacterized protein. (415 aa)
	UCREL1_1553	Pyruvate kinase; Belongs to the pyruvate kinase family. (526 aa)
	UCREL1_1107	Uncharacterized oxidoreductase ygbj protein. (480 aa)
	UCREL1_11313	Putative deoxyribose-phosphate aldolase protein. (271 aa)
	UCREL1_10964	Putative 2-deoxy-d-gluconate 3-dehydrogenase protein. (299 aa)
	UCREL1_10842	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (340 aa)
	UCREL1_10531	Putative dihydroxyacetone synthase protein. (875 aa)
	UCREL1_10086	Putative coagulation factor 5 8 type domain-containing protein. (260 aa)
	UCREL1_6639	Arabinan endo-1,5-alpha-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family. (325 aa)
	UCREL1_9425	Putative ribokinase protein. (242 aa)
	UCREL1_5939	Putative fructose--bisphosphatase protein; Belongs to the FBPase class 1 family. (347 aa)
	UCREL1_9083	Triosephosphate isomerase. (299 aa)
	UCREL1_3495	Putative fructose-bisphosphate aldolase protein. (298 aa)
	UCREL1_5454	Putative dihydroxyacetone kinase protein. (596 aa)
	UCREL1_4443	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (418 aa)
	UCREL1_4166	Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (256 aa)
	UCREL1_2859	Putative glycoside hydrolase family 43 protein. (301 aa)
	UCREL1_2725	Putative 2-deoxy-d-gluconate 3-dehydrogenase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (243 aa)
	UCREL1_1117	Putative dihydroxyacetone synthase protein. (698 aa)

Your Current Organism:

Eutypa lata

NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UCREL1_10072	UCREL1_1553	M7SFP1	M7T472	Putative phosphoenolpyruvate carboxykinase protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.959
UCREL1_10072	UCREL1_4680	M7SFP1	M7SUV3	Putative phosphoenolpyruvate carboxykinase protein.	Putative enolase protein.	0.933
UCREL1_10072	UCREL1_5939	M7SFP1	M7TB33	Putative phosphoenolpyruvate carboxykinase protein.	Putative fructose--bisphosphatase protein; Belongs to the FBPase class 1 family.	0.695
UCREL1_10072	UCREL1_6357	M7SFP1	M7SQA8	Putative phosphoenolpyruvate carboxykinase protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.461
UCREL1_10072	UCREL1_7894	M7SFP1	M7SFW1	Putative phosphoenolpyruvate carboxykinase protein.	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	0.534
UCREL1_10086	UCREL1_1107	M7T8I8	M7T4N2	Putative coagulation factor 5 8 type domain-containing protein.	Uncharacterized oxidoreductase ygbj protein.	0.458
UCREL1_10086	UCREL1_1553	M7T8I8	M7T472	Putative coagulation factor 5 8 type domain-containing protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.560
UCREL1_10086	UCREL1_2270	M7T8I8	M7T2B8	Putative coagulation factor 5 8 type domain-containing protein.	Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.	0.458
UCREL1_10086	UCREL1_2633	M7T8I8	M7T0I6	Putative coagulation factor 5 8 type domain-containing protein.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.520
UCREL1_10086	UCREL1_3495	M7T8I8	M7THR6	Putative coagulation factor 5 8 type domain-containing protein.	Putative fructose-bisphosphate aldolase protein.	0.413
UCREL1_10086	UCREL1_3713	M7T8I8	M7SS04	Putative coagulation factor 5 8 type domain-containing protein.	Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.	0.413
UCREL1_10086	UCREL1_3870	M7T8I8	M7SXX9	Putative coagulation factor 5 8 type domain-containing protein.	Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.	0.458
UCREL1_10086	UCREL1_4443	M7T8I8	M7TP89	Putative coagulation factor 5 8 type domain-containing protein.	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.	0.782
UCREL1_10086	UCREL1_4680	M7T8I8	M7SUV3	Putative coagulation factor 5 8 type domain-containing protein.	Putative enolase protein.	0.691
UCREL1_10086	UCREL1_6109	M7T8I8	M7SQX9	Putative coagulation factor 5 8 type domain-containing protein.	Putative uba ts-n domain containing protein.	0.560
UCREL1_10086	UCREL1_6357	M7T8I8	M7SQA8	Putative coagulation factor 5 8 type domain-containing protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.644
UCREL1_10086	UCREL1_7894	M7T8I8	M7SFW1	Putative coagulation factor 5 8 type domain-containing protein.	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	0.605
UCREL1_10086	UCREL1_8308	M7T8I8	M7SEQ2	Putative coagulation factor 5 8 type domain-containing protein.	Triosephosphate isomerase.	0.717
UCREL1_10086	UCREL1_9083	M7T8I8	M7TBD2	Putative coagulation factor 5 8 type domain-containing protein.	Triosephosphate isomerase.	0.717
UCREL1_10086	UCREL1_9086	M7T8I8	M7SIF5	Putative coagulation factor 5 8 type domain-containing protein.	Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.	0.458