20 items (Eutypa lata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UCREL1_11649	Putative midasin protein. (1810 aa)
	UCREL1_10308	Putative rrna biogenesis protein rrp5 protein. (1807 aa)
	UCREL1_10270	Putative nucleolar gtp-binding protein. (667 aa)
	UCREL1_7398	Putative f-box domain-containing protein. (397 aa)
	UCREL1_9323	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (436 aa)
	UCREL1_5273	Putative wd repeat-containing protein. (449 aa)
	UCREL1_5163	Putative 60s ribosomal protein l5 protein. (136 aa)
	UCREL1_10955	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	UCREL1_561	Putative nuclear fragile x mental retardation-interacting protein 1 protein. (508 aa)
	UCREL1_1263	Uncharacterized protein. (396 aa)
	UCREL1_8311	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (261 aa)
	UCREL1_8294	Uncharacterized protein. (126 aa)
	UCREL1_535	Putative 60s ribosomal protein l25 protein. (154 aa)
	UCREL1_7397	Putative ribosome biogenesis protein brx1 protein. (319 aa)
	UCREL1_353	Putative ribosome biogenesis protein sqt1 protein. (522 aa)
	UCREL1_10401	Putative ribosome biogenesis protein ssf1 protein. (509 aa)
	UCREL1_5712	Putative 60s ribosomal protein l10 protein. (220 aa)
	UCREL1_7720	Putative ribosome assembly protein 3 protein. (93 aa)
	UCREL1_3455	Putative brix domain-containing protein. (317 aa)
	UCREL1_593	Putative 60s ribosomal protein l6 protein. (200 aa)

Your Current Organism:

Eutypa lata

NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UCREL1_10270	UCREL1_10308	M7SF15	M7SEW8	Putative nucleolar gtp-binding protein.	Putative rrna biogenesis protein rrp5 protein.	0.712
UCREL1_10270	UCREL1_10401	M7SF15	M7T7P5	Putative nucleolar gtp-binding protein.	Putative ribosome biogenesis protein ssf1 protein.	0.583
UCREL1_10270	UCREL1_10955	M7SF15	M7SX42	Putative nucleolar gtp-binding protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.808
UCREL1_10270	UCREL1_11649	M7SF15	M7SBA3	Putative nucleolar gtp-binding protein.	Putative midasin protein.	0.545
UCREL1_10270	UCREL1_3455	M7SF15	M7THU8	Putative nucleolar gtp-binding protein.	Putative brix domain-containing protein.	0.930
UCREL1_10270	UCREL1_353	M7SF15	M7T7I4	Putative nucleolar gtp-binding protein.	Putative ribosome biogenesis protein sqt1 protein.	0.595
UCREL1_10270	UCREL1_5163	M7SF15	M7SU79	Putative nucleolar gtp-binding protein.	Putative 60s ribosomal protein l5 protein.	0.958
UCREL1_10270	UCREL1_5273	M7SF15	M7STY7	Putative nucleolar gtp-binding protein.	Putative wd repeat-containing protein.	0.685
UCREL1_10270	UCREL1_535	M7SF15	M7T6Y2	Putative nucleolar gtp-binding protein.	Putative 60s ribosomal protein l25 protein.	0.902
UCREL1_10270	UCREL1_5712	M7SF15	M7TBM6	Putative nucleolar gtp-binding protein.	Putative 60s ribosomal protein l10 protein.	0.931
UCREL1_10270	UCREL1_593	M7SF15	M7U0A6	Putative nucleolar gtp-binding protein.	Putative 60s ribosomal protein l6 protein.	0.884
UCREL1_10270	UCREL1_7397	M7SF15	M7T751	Putative nucleolar gtp-binding protein.	Putative ribosome biogenesis protein brx1 protein.	0.771
UCREL1_10270	UCREL1_7398	M7SF15	M7SH77	Putative nucleolar gtp-binding protein.	Putative f-box domain-containing protein.	0.753
UCREL1_10270	UCREL1_8294	M7SF15	M7T4K3	Putative nucleolar gtp-binding protein.	Uncharacterized protein.	0.664
UCREL1_10270	UCREL1_8311	M7SF15	M7T4J8	Putative nucleolar gtp-binding protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.822
UCREL1_10270	UCREL1_9323	M7SF15	M7SHU8	Putative nucleolar gtp-binding protein.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.664
UCREL1_10308	UCREL1_10270	M7SEW8	M7SF15	Putative rrna biogenesis protein rrp5 protein.	Putative nucleolar gtp-binding protein.	0.712
UCREL1_10308	UCREL1_10401	M7SEW8	M7T7P5	Putative rrna biogenesis protein rrp5 protein.	Putative ribosome biogenesis protein ssf1 protein.	0.675
UCREL1_10308	UCREL1_10955	M7SEW8	M7SX42	Putative rrna biogenesis protein rrp5 protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.982
UCREL1_10308	UCREL1_11649	M7SEW8	M7SBA3	Putative rrna biogenesis protein rrp5 protein.	Putative midasin protein.	0.671