(14 nodes) snRNA metabolic process network (Eutypa lata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UCREL1_1919	Putative exosome complex exonuclease rrp4 protein. (359 aa)
	UCREL1_11225	Putative pre-mrna-splicing factor atp-dependent rna helicase prp16 protein. (980 aa)
	UCREL1_10802	Putative 3 exoribonuclease family protein. (306 aa)
	UCREL1_7935	Putative exosome complex subunit rrp46 protein. (252 aa)
	UCREL1_9779	Putative exosome complex exonuclease rrp41 protein. (270 aa)
	UCREL1_9780	Putative 3 exoribonuclease family protein. (328 aa)
	UCREL1_1800	Putative trna pseudouridine synthase d protein. (869 aa)
	UCREL1_10735	Putative exosome complex exonuclease rrp43 protein. (646 aa)
	UCREL1_8254	Putative exosome complex exonuclease rrp protein. (874 aa)
	UCREL1_1203	Uncharacterized protein. (317 aa)
	UCREL1_291	Putative ribonuclease 3 protein. (263 aa)
	UCREL1_6245	Putative h aca ribonucleoprotein complex subunit 2 protein. (242 aa)
	UCREL1_6373	Putative exosome complex exonuclease rrp40 protein. (252 aa)
	UCREL1_5478	Putative sas10 utp3 c1d protein. (218 aa)

Your Current Organism:

Eutypa lata

NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UCREL1_10735	UCREL1_10802	M7SXN7	M7S826	Putative exosome complex exonuclease rrp43 protein.	Putative 3 exoribonuclease family protein.	0.999
UCREL1_10735	UCREL1_1919	M7SXN7	M7TWJ2	Putative exosome complex exonuclease rrp43 protein.	Putative exosome complex exonuclease rrp4 protein.	0.999
UCREL1_10735	UCREL1_5478	M7SXN7	M7TLA3	Putative exosome complex exonuclease rrp43 protein.	Putative sas10 utp3 c1d protein.	0.998
UCREL1_10735	UCREL1_6245	M7SXN7	M7TA75	Putative exosome complex exonuclease rrp43 protein.	Putative h aca ribonucleoprotein complex subunit 2 protein.	0.630
UCREL1_10735	UCREL1_6373	M7SXN7	M7TIV4	Putative exosome complex exonuclease rrp43 protein.	Putative exosome complex exonuclease rrp40 protein.	0.999
UCREL1_10735	UCREL1_7935	M7SXN7	M7SFS3	Putative exosome complex exonuclease rrp43 protein.	Putative exosome complex subunit rrp46 protein.	0.999
UCREL1_10735	UCREL1_8254	M7SXN7	M7T4P4	Putative exosome complex exonuclease rrp43 protein.	Putative exosome complex exonuclease rrp protein.	0.966
UCREL1_10735	UCREL1_9779	M7SXN7	M7SG95	Putative exosome complex exonuclease rrp43 protein.	Putative exosome complex exonuclease rrp41 protein.	0.999
UCREL1_10735	UCREL1_9780	M7SXN7	M7SGJ8	Putative exosome complex exonuclease rrp43 protein.	Putative 3 exoribonuclease family protein.	0.977
UCREL1_10802	UCREL1_10735	M7S826	M7SXN7	Putative 3 exoribonuclease family protein.	Putative exosome complex exonuclease rrp43 protein.	0.999
UCREL1_10802	UCREL1_1919	M7S826	M7TWJ2	Putative 3 exoribonuclease family protein.	Putative exosome complex exonuclease rrp4 protein.	0.999
UCREL1_10802	UCREL1_5478	M7S826	M7TLA3	Putative 3 exoribonuclease family protein.	Putative sas10 utp3 c1d protein.	0.986
UCREL1_10802	UCREL1_6245	M7S826	M7TA75	Putative 3 exoribonuclease family protein.	Putative h aca ribonucleoprotein complex subunit 2 protein.	0.661
UCREL1_10802	UCREL1_6373	M7S826	M7TIV4	Putative 3 exoribonuclease family protein.	Putative exosome complex exonuclease rrp40 protein.	0.999
UCREL1_10802	UCREL1_7935	M7S826	M7SFS3	Putative 3 exoribonuclease family protein.	Putative exosome complex subunit rrp46 protein.	0.999
UCREL1_10802	UCREL1_9779	M7S826	M7SG95	Putative 3 exoribonuclease family protein.	Putative exosome complex exonuclease rrp41 protein.	0.998
UCREL1_10802	UCREL1_9780	M7S826	M7SGJ8	Putative 3 exoribonuclease family protein.	Putative 3 exoribonuclease family protein.	0.980
UCREL1_11225	UCREL1_1919	M7S6W9	M7TWJ2	Putative pre-mrna-splicing factor atp-dependent rna helicase prp16 protein.	Putative exosome complex exonuclease rrp4 protein.	0.404
UCREL1_1800	UCREL1_6245	M7SX43	M7TA75	Putative trna pseudouridine synthase d protein.	Putative h aca ribonucleoprotein complex subunit 2 protein.	0.713
UCREL1_1919	UCREL1_10735	M7TWJ2	M7SXN7	Putative exosome complex exonuclease rrp4 protein.	Putative exosome complex exonuclease rrp43 protein.	0.999