(10 nodes) Nuclear-transcribed mRNA catabolic process, non-stop decay network (Eutypa lata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UCREL1_9780	Putative 3 exoribonuclease family protein. (328 aa)
	UCREL1_8355	Putative antiviral protein. (1356 aa)
	UCREL1_338	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (406 aa)
	UCREL1_9420	Putative 3-5 exoribonuclease csl4 protein. (448 aa)
	UCREL1_6000	Putative meiotic recombination protein rec14 protein. (328 aa)
	UCREL1_7935	Putative exosome complex subunit rrp46 protein. (252 aa)
	UCREL1_10802	Putative 3 exoribonuclease family protein. (306 aa)
	UCREL1_9779	Putative exosome complex exonuclease rrp41 protein. (270 aa)
	UCREL1_6035	Putative dshct domain-containing protein. (1281 aa)
	UCREL1_10735	Putative exosome complex exonuclease rrp43 protein. (646 aa)

Your Current Organism:

Eutypa lata

NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UCREL1_10735	UCREL1_10802	M7SXN7	M7S826	Putative exosome complex exonuclease rrp43 protein.	Putative 3 exoribonuclease family protein.	0.999
UCREL1_10735	UCREL1_6000	M7SXN7	M7TAX0	Putative exosome complex exonuclease rrp43 protein.	Putative meiotic recombination protein rec14 protein.	0.733
UCREL1_10735	UCREL1_6035	M7SXN7	M7SRV7	Putative exosome complex exonuclease rrp43 protein.	Putative dshct domain-containing protein.	0.940
UCREL1_10735	UCREL1_7935	M7SXN7	M7SFS3	Putative exosome complex exonuclease rrp43 protein.	Putative exosome complex subunit rrp46 protein.	0.999
UCREL1_10735	UCREL1_8355	M7SXN7	M7T4G8	Putative exosome complex exonuclease rrp43 protein.	Putative antiviral protein.	0.774
UCREL1_10735	UCREL1_9420	M7SXN7	M7TAI9	Putative exosome complex exonuclease rrp43 protein.	Putative 3-5 exoribonuclease csl4 protein.	0.999
UCREL1_10735	UCREL1_9779	M7SXN7	M7SG95	Putative exosome complex exonuclease rrp43 protein.	Putative exosome complex exonuclease rrp41 protein.	0.999
UCREL1_10735	UCREL1_9780	M7SXN7	M7SGJ8	Putative exosome complex exonuclease rrp43 protein.	Putative 3 exoribonuclease family protein.	0.977
UCREL1_10802	UCREL1_10735	M7S826	M7SXN7	Putative 3 exoribonuclease family protein.	Putative exosome complex exonuclease rrp43 protein.	0.999
UCREL1_10802	UCREL1_6000	M7S826	M7TAX0	Putative 3 exoribonuclease family protein.	Putative meiotic recombination protein rec14 protein.	0.476
UCREL1_10802	UCREL1_6035	M7S826	M7SRV7	Putative 3 exoribonuclease family protein.	Putative dshct domain-containing protein.	0.948
UCREL1_10802	UCREL1_7935	M7S826	M7SFS3	Putative 3 exoribonuclease family protein.	Putative exosome complex subunit rrp46 protein.	0.999
UCREL1_10802	UCREL1_8355	M7S826	M7T4G8	Putative 3 exoribonuclease family protein.	Putative antiviral protein.	0.849
UCREL1_10802	UCREL1_9420	M7S826	M7TAI9	Putative 3 exoribonuclease family protein.	Putative 3-5 exoribonuclease csl4 protein.	0.999
UCREL1_10802	UCREL1_9779	M7S826	M7SG95	Putative 3 exoribonuclease family protein.	Putative exosome complex exonuclease rrp41 protein.	0.998
UCREL1_10802	UCREL1_9780	M7S826	M7SGJ8	Putative 3 exoribonuclease family protein.	Putative 3 exoribonuclease family protein.	0.980
UCREL1_338	UCREL1_6000	M7T6W4	M7TAX0	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	Putative meiotic recombination protein rec14 protein.	0.407
UCREL1_338	UCREL1_6035	M7T6W4	M7SRV7	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	Putative dshct domain-containing protein.	0.654
UCREL1_338	UCREL1_8355	M7T6W4	M7T4G8	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	Putative antiviral protein.	0.618
UCREL1_6000	UCREL1_10735	M7TAX0	M7SXN7	Putative meiotic recombination protein rec14 protein.	Putative exosome complex exonuclease rrp43 protein.	0.733