11 items (Eutypa lata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UCREL1_593	Putative 60s ribosomal protein l6 protein. (200 aa)
	UCREL1_9874	Eukaryotic translation initiation factor 5A. (162 aa)
	UCREL1_8387	Putative 60s ribosomal protein l2 protein. (254 aa)
	UCREL1_11170	Putative 60s ribosomal protein l26 protein. (134 aa)
	UCREL1_8807	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
	UCREL1_4963	Putative ribosomal protein l14 protein. (147 aa)
	UCREL1_4096	Putative kow motif containing protein. (416 aa)
	UCREL1_9505	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1317 aa)
	UCREL1_223	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1036 aa)
	UCREL1_5064	Putative mitochondrial 54s ribosomal protein rml2 protein. (321 aa)
	UCREL1_7249	Putative woronin body major protein. (441 aa)

Your Current Organism:

Eutypa lata

NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UCREL1_11170	UCREL1_4963	M7S744	M7SNN0	Putative 60s ribosomal protein l26 protein.	Putative ribosomal protein l14 protein.	0.999
UCREL1_11170	UCREL1_5064	M7S744	M7TDE2	Putative 60s ribosomal protein l26 protein.	Putative mitochondrial 54s ribosomal protein rml2 protein.	0.991
UCREL1_11170	UCREL1_593	M7S744	M7U0A6	Putative 60s ribosomal protein l26 protein.	Putative 60s ribosomal protein l6 protein.	0.999
UCREL1_11170	UCREL1_7249	M7S744	M7TGC5	Putative 60s ribosomal protein l26 protein.	Putative woronin body major protein.	0.842
UCREL1_11170	UCREL1_8387	M7S744	M7SEL2	Putative 60s ribosomal protein l26 protein.	Putative 60s ribosomal protein l2 protein.	0.999
UCREL1_11170	UCREL1_8807	M7S744	M7SIW4	Putative 60s ribosomal protein l26 protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
UCREL1_11170	UCREL1_9505	M7S744	M7T156	Putative 60s ribosomal protein l26 protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.474
UCREL1_11170	UCREL1_9874	M7S744	M7SAJ0	Putative 60s ribosomal protein l26 protein.	Eukaryotic translation initiation factor 5A.	0.960
UCREL1_4096	UCREL1_5064	M7SQX0	M7TDE2	Putative kow motif containing protein.	Putative mitochondrial 54s ribosomal protein rml2 protein.	0.481
UCREL1_4963	UCREL1_11170	M7SNN0	M7S744	Putative ribosomal protein l14 protein.	Putative 60s ribosomal protein l26 protein.	0.999
UCREL1_4963	UCREL1_5064	M7SNN0	M7TDE2	Putative ribosomal protein l14 protein.	Putative mitochondrial 54s ribosomal protein rml2 protein.	0.886
UCREL1_4963	UCREL1_593	M7SNN0	M7U0A6	Putative ribosomal protein l14 protein.	Putative 60s ribosomal protein l6 protein.	0.999
UCREL1_4963	UCREL1_7249	M7SNN0	M7TGC5	Putative ribosomal protein l14 protein.	Putative woronin body major protein.	0.870
UCREL1_4963	UCREL1_8387	M7SNN0	M7SEL2	Putative ribosomal protein l14 protein.	Putative 60s ribosomal protein l2 protein.	0.999
UCREL1_4963	UCREL1_8807	M7SNN0	M7SIW4	Putative ribosomal protein l14 protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
UCREL1_4963	UCREL1_9505	M7SNN0	M7T156	Putative ribosomal protein l14 protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.424
UCREL1_4963	UCREL1_9874	M7SNN0	M7SAJ0	Putative ribosomal protein l14 protein.	Eukaryotic translation initiation factor 5A.	0.987
UCREL1_5064	UCREL1_11170	M7TDE2	M7S744	Putative mitochondrial 54s ribosomal protein rml2 protein.	Putative 60s ribosomal protein l26 protein.	0.991
UCREL1_5064	UCREL1_4096	M7TDE2	M7SQX0	Putative mitochondrial 54s ribosomal protein rml2 protein.	Putative kow motif containing protein.	0.481
UCREL1_5064	UCREL1_4963	M7TDE2	M7SNN0	Putative mitochondrial 54s ribosomal protein rml2 protein.	Putative ribosomal protein l14 protein.	0.886