(26 nodes) Ubiquitin-conjugating enzyme/RWD-like network (Eutypa lata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UCREL1_9718	Putative ubiquitin-conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family. (179 aa)
	UCREL1_1986	Putative ubiquitin-conjugating enzyme e2 protein; Belongs to the ubiquitin-conjugating enzyme family. (101 aa)
	UCREL1_2448	Putative ubiquitin-conjugating enzyme e2 2 protein; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
	UCREL1_3769	Putative ubiquitin-conjugating enzyme protein. (281 aa)
	UCREL1_852	Putative serine threonine-protein kinase gcn2 protein. (990 aa)
	UCREL1_4515	Putative ubiquitin-conjugating enzyme protein. (135 aa)
	UCREL1_4516	Putative ubiquitin-conjugating enzyme protein; Belongs to the complex I LYR family. (494 aa)
	UCREL1_4930	Putative pre-mrna-splicing factor atp-dependent rna helicase prp22 protein. (1246 aa)
	UCREL1_9398	Putative ubiquitin-conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family. (238 aa)
	UCREL1_6843	Putative ubiquitin-conjugating enzyme e2z protein. (298 aa)
	UCREL1_385	Putative impact family protein. (292 aa)
	UCREL1_1227	Putative duf1115 domain protein. (355 aa)
	UCREL1_11512	Putative ubiquitin-conjugating enzyme protein. (449 aa)
	UCREL1_8665	Putative ubiquitin-conjugating enzyme protein. (322 aa)
	UCREL1_1289	Putative ubiquitin-conjugating enzyme family protein. (669 aa)
	UCREL1_6285	Putative sumo-conjugating enzyme ubc9 protein; Belongs to the ubiquitin-conjugating enzyme family. (157 aa)
	UCREL1_6934	Putative ubiquitin-conjugating enzyme protein. (188 aa)
	UCREL1_4984	Putative ubiquitin-conjugating enzyme e2 q2 protein. (309 aa)
	UCREL1_8105	Putative rwd domain-containing protein. (242 aa)
	UCREL1_8677	Putative ubiquitin-conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family. (166 aa)
	UCREL1_9058	Putative ubiquitin-conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family. (138 aa)
	UCREL1_9388	Putative ubiquitin-conjugating enzyme protein. (464 aa)
	UCREL1_7639	Putative ubiquitin conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family. (150 aa)
	UCREL1_8037	Putative nedd8-conjugating enzyme ubc12 protein; Belongs to the ubiquitin-conjugating enzyme family. (187 aa)
	UCREL1_9118	Putative ubiquitin-conjugating enzyme e2-16 kDa protein; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	UCREL1_9219	Putative ubiquitin-conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family. (230 aa)

Your Current Organism:

Eutypa lata

NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UCREL1_11512	UCREL1_1986	M7T4J4	M7TWD7	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme e2 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.497
UCREL1_11512	UCREL1_2448	M7T4J4	M7TV28	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme e2 2 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.549
UCREL1_11512	UCREL1_3769	M7T4J4	M7TRD1	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme protein.	0.693
UCREL1_11512	UCREL1_4515	M7T4J4	M7TP24	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme protein.	0.471
UCREL1_11512	UCREL1_4516	M7T4J4	M7TEV4	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme protein; Belongs to the complex I LYR family.	0.780
UCREL1_11512	UCREL1_4984	M7T4J4	M7SNM5	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme e2 q2 protein.	0.519
UCREL1_11512	UCREL1_6843	M7T4J4	M7T8Q7	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme e2z protein.	0.900
UCREL1_11512	UCREL1_6934	M7T4J4	M7SPE1	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme protein.	0.429
UCREL1_11512	UCREL1_7639	M7T4J4	M7SGH6	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family.	0.593
UCREL1_11512	UCREL1_8037	M7T4J4	M7SFF0	Putative ubiquitin-conjugating enzyme protein.	Putative nedd8-conjugating enzyme ubc12 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.660
UCREL1_11512	UCREL1_8665	M7T4J4	M7T3G2	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme protein.	0.677
UCREL1_11512	UCREL1_8677	M7T4J4	M7SJ82	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family.	0.657
UCREL1_11512	UCREL1_9058	M7T4J4	M7SIH8	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family.	0.698
UCREL1_11512	UCREL1_9118	M7T4J4	M7SCJ2	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme e2-16 kDa protein; Belongs to the ubiquitin-conjugating enzyme family.	0.429
UCREL1_11512	UCREL1_9219	M7T4J4	M7SC96	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family.	0.645
UCREL1_11512	UCREL1_9398	M7T4J4	M7TAI1	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family.	0.661
UCREL1_11512	UCREL1_9718	M7T4J4	M7SAU8	Putative ubiquitin-conjugating enzyme protein.	Putative ubiquitin-conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family.	0.619
UCREL1_1227	UCREL1_6285	M7T533	M7SQH0	Putative duf1115 domain protein.	Putative sumo-conjugating enzyme ubc9 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.739
UCREL1_1289	UCREL1_2448	M7SYI5	M7TV28	Putative ubiquitin-conjugating enzyme family protein.	Putative ubiquitin-conjugating enzyme e2 2 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.570
UCREL1_1289	UCREL1_3769	M7SYI5	M7TRD1	Putative ubiquitin-conjugating enzyme family protein.	Putative ubiquitin-conjugating enzyme protein.	0.503