6 items (Deinococcus wulumuqiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	glgC	Unannotated protein; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (413 aa)
	DVJ83_02245	Unannotated protein; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (423 aa)
	glgB	Unannotated protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (703 aa)
	DVJ83_00350	Unannotated protein. (838 aa)
	DVJ83_12665	Unannotated protein. (544 aa)
	glgA	Unannotated protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (461 aa)

Your Current Organism:

Deinococcus wulumuqiensis

NCBI taxonomy Id: 1288484
Other names: D. wulumuqiensis R12, Deinococcus wulumuqiensis DSM 28115, Deinococcus wulumuqiensis R12

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVJ83_00350	DVJ83_02245	GCA_000348665_01531	GCA_000348665_01304	Unannotated protein.	Unannotated protein; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.971
DVJ83_00350	DVJ83_12665	GCA_000348665_01531	GCA_000348665_01673	Unannotated protein.	Unannotated protein.	0.990
DVJ83_00350	glgA	GCA_000348665_01531	GCA_000348665_02363	Unannotated protein.	Unannotated protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	0.942
DVJ83_00350	glgB	GCA_000348665_01531	GCA_000348665_01325	Unannotated protein.	Unannotated protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.980
DVJ83_00350	glgC	GCA_000348665_01531	GCA_000348665_00659	Unannotated protein.	Unannotated protein; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.975
DVJ83_02245	DVJ83_00350	GCA_000348665_01304	GCA_000348665_01531	Unannotated protein; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	Unannotated protein.	0.971
DVJ83_02245	DVJ83_12665	GCA_000348665_01304	GCA_000348665_01673	Unannotated protein; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	Unannotated protein.	0.917
DVJ83_02245	glgA	GCA_000348665_01304	GCA_000348665_02363	Unannotated protein; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	Unannotated protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	0.994
DVJ83_02245	glgB	GCA_000348665_01304	GCA_000348665_01325	Unannotated protein; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	Unannotated protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.911
DVJ83_02245	glgC	GCA_000348665_01304	GCA_000348665_00659	Unannotated protein; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	Unannotated protein; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.923
DVJ83_12665	DVJ83_00350	GCA_000348665_01673	GCA_000348665_01531	Unannotated protein.	Unannotated protein.	0.990
DVJ83_12665	DVJ83_02245	GCA_000348665_01673	GCA_000348665_01304	Unannotated protein.	Unannotated protein; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.917
DVJ83_12665	glgB	GCA_000348665_01673	GCA_000348665_01325	Unannotated protein.	Unannotated protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.896
DVJ83_12665	glgC	GCA_000348665_01673	GCA_000348665_00659	Unannotated protein.	Unannotated protein; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.917
glgA	DVJ83_00350	GCA_000348665_02363	GCA_000348665_01531	Unannotated protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	Unannotated protein.	0.942
glgA	DVJ83_02245	GCA_000348665_02363	GCA_000348665_01304	Unannotated protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	Unannotated protein; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.994
glgA	glgB	GCA_000348665_02363	GCA_000348665_01325	Unannotated protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	Unannotated protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.996
glgA	glgC	GCA_000348665_02363	GCA_000348665_00659	Unannotated protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	Unannotated protein; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.994
glgB	DVJ83_00350	GCA_000348665_01325	GCA_000348665_01531	Unannotated protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	Unannotated protein.	0.980
glgB	DVJ83_02245	GCA_000348665_01325	GCA_000348665_01304	Unannotated protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	Unannotated protein; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.911