(46 nodes) Pentose phosphate pathway network (Streptomyces sp. TAA204)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000424965_00007	Unannotated protein. (425 aa)
	GCA_000424965_00126	Unannotated protein. (325 aa)
	GCA_000424965_00233	Unannotated protein. (253 aa)
	GCA_000424965_00423	Unannotated protein. (327 aa)
	GCA_000424965_00528	Unannotated protein. (289 aa)
	GCA_000424965_00618	Unannotated protein. (482 aa)
	GCA_000424965_00836	Unannotated protein. (280 aa)
	GCA_000424965_00837	Unannotated protein. (268 aa)
	GCA_000424965_00980	Unannotated protein. (253 aa)
	GCA_000424965_01036	Unannotated protein. (262 aa)
	GCA_000424965_01044	Unannotated protein. (216 aa)
	GCA_000424965_01077	Unannotated protein. (512 aa)
	GCA_000424965_01106	Unannotated protein. (200 aa)
	GCA_000424965_01292	Unannotated protein. (310 aa)
	GCA_000424965_01756	Unannotated protein. (275 aa)
	GCA_000424965_01882	Unannotated protein. (250 aa)
	GCA_000424965_01898	Unannotated protein. (344 aa)
	GCA_000424965_01941	Unannotated protein. (369 aa)
	GCA_000424965_02001	Unannotated protein. (319 aa)
	GCA_000424965_02009	Unannotated protein. (313 aa)
	GCA_000424965_02037	Unannotated protein. (185 aa)
	GCA_000424965_02248	Unannotated protein. (342 aa)
	GCA_000424965_02347	Unannotated protein. (311 aa)
	GCA_000424965_02437	Unannotated protein. (549 aa)
	GCA_000424965_02444	Unannotated protein. (262 aa)
	GCA_000424965_02446	Unannotated protein. (508 aa)
	GCA_000424965_02447	Unannotated protein. (380 aa)
	GCA_000424965_02448	Unannotated protein. (691 aa)
	GCA_000424965_02757	Unannotated protein. (229 aa)
	GCA_000424965_03034	Unannotated protein. (410 aa)
	GCA_000424965_03189	Unannotated protein. (341 aa)
	GCA_000424965_03318	Unannotated protein. (317 aa)
	GCA_000424965_03319	Unannotated protein. (163 aa)
	GCA_000424965_03329	Unannotated protein. (161 aa)
	GCA_000424965_03424	Unannotated protein. (293 aa)
	GCA_000424965_03680	Unannotated protein. (817 aa)
	GCA_000424965_03686	Unannotated protein. (286 aa)
	GCA_000424965_03735	Unannotated protein. (365 aa)
	GCA_000424965_03948	Unannotated protein. (254 aa)
	GCA_000424965_03992	Unannotated protein. (250 aa)
	GCA_000424965_04204	Unannotated protein. (340 aa)
	GCA_000424965_04241	Unannotated protein. (262 aa)
	GCA_000424965_04490	Unannotated protein. (214 aa)
	GCA_000424965_04780	Unannotated protein. (279 aa)
	GCA_000424965_04815	Unannotated protein. (480 aa)
	GCA_000424965_04835	Unannotated protein. (499 aa)

Your Current Organism:

Streptomyces sp. TAA204

NCBI taxonomy Id: 1289387
Other names: S. sp. TAA204

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000424965_00007	GCA_000424965_00126	Unannotated protein.	Unannotated protein.	0.638
GCA_000424965_00007	GCA_000424965_00423	Unannotated protein.	Unannotated protein.	0.406
GCA_000424965_00007	GCA_000424965_00836	Unannotated protein.	Unannotated protein.	0.919
GCA_000424965_00007	GCA_000424965_01044	Unannotated protein.	Unannotated protein.	0.678
GCA_000424965_00007	GCA_000424965_01292	Unannotated protein.	Unannotated protein.	0.479
GCA_000424965_00007	GCA_000424965_01898	Unannotated protein.	Unannotated protein.	0.784
GCA_000424965_00007	GCA_000424965_01941	Unannotated protein.	Unannotated protein.	0.412
GCA_000424965_00007	GCA_000424965_02009	Unannotated protein.	Unannotated protein.	0.792
GCA_000424965_00007	GCA_000424965_02248	Unannotated protein.	Unannotated protein.	0.929
GCA_000424965_00007	GCA_000424965_02347	Unannotated protein.	Unannotated protein.	0.412
GCA_000424965_00007	GCA_000424965_02437	Unannotated protein.	Unannotated protein.	0.863
GCA_000424965_00007	GCA_000424965_02444	Unannotated protein.	Unannotated protein.	0.475
GCA_000424965_00007	GCA_000424965_02446	Unannotated protein.	Unannotated protein.	0.913
GCA_000424965_00007	GCA_000424965_02447	Unannotated protein.	Unannotated protein.	0.914
GCA_000424965_00007	GCA_000424965_02448	Unannotated protein.	Unannotated protein.	0.954
GCA_000424965_00007	GCA_000424965_02757	Unannotated protein.	Unannotated protein.	0.517
GCA_000424965_00007	GCA_000424965_03189	Unannotated protein.	Unannotated protein.	0.929
GCA_000424965_00007	GCA_000424965_03318	Unannotated protein.	Unannotated protein.	0.412
GCA_000424965_00007	GCA_000424965_03424	Unannotated protein.	Unannotated protein.	0.472
GCA_000424965_00007	GCA_000424965_03680	Unannotated protein.	Unannotated protein.	0.794