54 items (Botrytis cinerea BcDW1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PSD2	Phosphatidylserine decarboxylase 2 alpha chain; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine. Belongs to the phosphatidylserine decarboxylase family. PSD-B subfamily. Eukaryotic type II sub-subfamily. (1120 aa)
	BcDW1_10021	Putative vacuolar fusion protein ccz1 protein. (902 aa)
	BcDW1_969	Putative sorting nexin-41 protein. (625 aa)
	BcDW1_1289	Putative vacuolar-sorting protein snf7 protein. (226 aa)
	BcDW1_2103	E3 ubiquitin-protein ligase. (820 aa)
	BcDW1_2555	Putative snf7 family protein. (214 aa)
	BcDW1_3519	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane. (727 aa)
	BcDW1_3710	Putative vacuolar fusion protein mon1 protein. (686 aa)
	BcDW1_4179	Putative vacuolar protein-sorting-associated protein 36 protein. (636 aa)
	BcDW1_4174	Putative snf7 family protein. (247 aa)
	BcDW1_4561	Putative vacuolar segregation protein. (659 aa)
	BcDW1_1911	Thioredoxin reductase. (1204 aa)
	BcDW1_2040	Putative vacuolar sorting receptor protein. (338 aa)
	BcDW1_5976	BTB domain-containing protein. (251 aa)
	BcDW1_6039	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (260 aa)
	BcDW1_6623	Putative vacuolar protein sorting 55 protein. (128 aa)
	BcDW1_7529	Uncharacterized protein. (176 aa)
	BcDW1_7504	Uncharacterized protein. (142 aa)
	BcDW1_7773	Putative snf7 family protein. (459 aa)
	BcDW1_5521	Putative autophagy protein apg6 protein. (501 aa)
	BcDW1_8991	Uncharacterized protein. (434 aa)
	BcDW1_28	Putative wd-repeat protein pop3 protein. (322 aa)
	BcDW1_65	Putative vacuolar targeting protein atg24 protein. (463 aa)
	BcDW1_703	Putative autophagy related lipase protein. (566 aa)
	BcDW1_7788	Putative class e vacuolar protein-sorting machinery protein hse1 protein. (692 aa)
	BcDW1_754	Putative fyve zinc finger protein. (691 aa)
	BcDW1_1212	Putative low temperature viability protein. (419 aa)
	BcDW1_1362	Putative rab gtpase protein. (221 aa)
	BcDW1_1744	Putative phosphatase family protein. (1044 aa)
	BcDW1_2833	Putative 1-phosphatidylinositol-3-phosphate 5-kinase fab1 protein. (2524 aa)
	BcDW1_3104	Putative snf7 family protein. (228 aa)
	BcDW1_3182	Putative vacuolar protein sorting protein 46 protein. (198 aa)
	BcDW1_1021	Putative snare domain-containing protein; Belongs to the syntaxin family. (350 aa)
	BcDW1_10588	Putative pq loop repeat protein. (263 aa)
	BcDW1_1260	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (736 aa)
	BcDW1_1730	Putative cysteine protease protein; Belongs to the peptidase C2 family. (853 aa)
	BcDW1_4709	Putative vacuolar sorting atpase protein; Belongs to the AAA ATPase family. (430 aa)
	BcDW1_5225	Putative extracellular triacylglycerol protein. (465 aa)
	BcDW1_3139	Putative actin cytoskeleton-regulatory complex protein pan1 protein. (1444 aa)
	BcDW1_6458	Putative uba ts-n domain containing protein. (1329 aa)
	BcDW1_6464	Putative cytoskeleton assembly control protein sla1 protein. (1152 aa)
	BcDW1_6754	Putative endocytosis and cytoskeletal organization protein. (404 aa)
	BcDW1_6784	Putative spry domain-containing protein. (537 aa)
	BcDW1_7019	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (236 aa)
	BcDW1_7054	Putative autophagy related lipase protein. (672 aa)
	BcDW1_5469	Putative vesicle transport v-snare protein. (224 aa)
	BcDW1_7992	Putative vacuolar protein sorting-associated protein. (173 aa)
	BcDW1_8583	Uncharacterized protein. (439 aa)
	BcDW1_8377	Uncharacterized protein. (254 aa)
	BcDW1_9153	Putative phosphatidylserine decarboxylase protein. (407 aa)
	BcDW1_10162	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family. (183 aa)
	BcDW1_7890	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane. (957 aa)
	BcDW1_8013	Putative c6 transcription factor protein. (795 aa)
	BcDW1_8378	Uncharacterized protein. (417 aa)

Your Current Organism:

Botrytis cinerea BcDW1

NCBI taxonomy Id: 1290391
Other names: B. cinerea BcDW1, Botryotinia fuckeliana BcDW1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BcDW1_10021	BcDW1_10162	M7TD55	M7TJN2	Putative vacuolar fusion protein ccz1 protein.	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	0.454
BcDW1_10021	BcDW1_1362	M7TD55	M7U8B2	Putative vacuolar fusion protein ccz1 protein.	Putative rab gtpase protein.	0.476
BcDW1_10021	BcDW1_3710	M7TD55	M7UUM2	Putative vacuolar fusion protein ccz1 protein.	Putative vacuolar fusion protein mon1 protein.	0.999
BcDW1_10021	BcDW1_5469	M7TD55	M7TQR9	Putative vacuolar fusion protein ccz1 protein.	Putative vesicle transport v-snare protein.	0.539
BcDW1_10021	BcDW1_5521	M7TD55	M7UGK1	Putative vacuolar fusion protein ccz1 protein.	Putative autophagy protein apg6 protein.	0.734
BcDW1_10021	BcDW1_8991	M7TD55	M7UFW8	Putative vacuolar fusion protein ccz1 protein.	Uncharacterized protein.	0.468
BcDW1_10162	BcDW1_10021	M7TJN2	M7TD55	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Putative vacuolar fusion protein ccz1 protein.	0.454
BcDW1_10162	BcDW1_1021	M7TJN2	M7U2R5	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Putative snare domain-containing protein; Belongs to the syntaxin family.	0.498
BcDW1_10162	BcDW1_1362	M7TJN2	M7U8B2	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Putative rab gtpase protein.	0.527
BcDW1_10162	BcDW1_1744	M7TJN2	M7U7R3	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Putative phosphatase family protein.	0.515
BcDW1_10162	BcDW1_1911	M7TJN2	M7UR49	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Thioredoxin reductase.	0.515
BcDW1_10162	BcDW1_2040	M7TJN2	M7UQT2	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Putative vacuolar sorting receptor protein.	0.523
BcDW1_10162	BcDW1_2103	M7TJN2	M7UZ78	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	E3 ubiquitin-protein ligase.	0.420
BcDW1_10162	BcDW1_28	M7TJN2	M7UCD7	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Putative wd-repeat protein pop3 protein.	0.597
BcDW1_10162	BcDW1_3519	M7TJN2	M7UVG6	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.	0.419
BcDW1_10162	BcDW1_4561	M7TJN2	M7UT13	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Putative vacuolar segregation protein.	0.425
BcDW1_10162	BcDW1_5469	M7TJN2	M7TQR9	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Putative vesicle transport v-snare protein.	0.431
BcDW1_10162	BcDW1_7504	M7TJN2	M7UJY3	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.551
BcDW1_10162	BcDW1_7529	M7TJN2	M7UK02	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.551
BcDW1_10162	BcDW1_7788	M7TJN2	M7UAB2	Putative adp-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	Putative class e vacuolar protein-sorting machinery protein hse1 protein.	0.435