6 items (Botrytis cinerea BcDW1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NIP1	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (869 aa)
	PRT1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (744 aa)
	BcDW1_9924	Putative eukaryotic translation initiation factor 2 subunit gamma protein. (518 aa)
	BcDW1_2186	Putative eukaryotic translation initiation factor 2 beta subunit protein. (317 aa)
	BcDW1_1807	Putative eukaryotic translation initiation factor 5 protein. (427 aa)
	BcDW1_1454	Putative eukaryotic translation initiation factor 2 alpha subunit protein. (310 aa)

Your Current Organism:

Botrytis cinerea BcDW1

NCBI taxonomy Id: 1290391
Other names: B. cinerea BcDW1, Botryotinia fuckeliana BcDW1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BcDW1_1454	BcDW1_1807	M7V1A0	M7U768	Putative eukaryotic translation initiation factor 2 alpha subunit protein.	Putative eukaryotic translation initiation factor 5 protein.	0.998
BcDW1_1454	BcDW1_2186	M7V1A0	M7TZU4	Putative eukaryotic translation initiation factor 2 alpha subunit protein.	Putative eukaryotic translation initiation factor 2 beta subunit protein.	0.999
BcDW1_1454	BcDW1_9924	M7V1A0	M7TJV1	Putative eukaryotic translation initiation factor 2 alpha subunit protein.	Putative eukaryotic translation initiation factor 2 subunit gamma protein.	0.999
BcDW1_1454	NIP1	M7V1A0	M7UF21	Putative eukaryotic translation initiation factor 2 alpha subunit protein.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.994
BcDW1_1454	PRT1	M7V1A0	M7TJP4	Putative eukaryotic translation initiation factor 2 alpha subunit protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.994
BcDW1_1807	BcDW1_1454	M7U768	M7V1A0	Putative eukaryotic translation initiation factor 5 protein.	Putative eukaryotic translation initiation factor 2 alpha subunit protein.	0.998
BcDW1_1807	BcDW1_2186	M7U768	M7TZU4	Putative eukaryotic translation initiation factor 5 protein.	Putative eukaryotic translation initiation factor 2 beta subunit protein.	0.996
BcDW1_1807	BcDW1_9924	M7U768	M7TJV1	Putative eukaryotic translation initiation factor 5 protein.	Putative eukaryotic translation initiation factor 2 subunit gamma protein.	0.997
BcDW1_1807	NIP1	M7U768	M7UF21	Putative eukaryotic translation initiation factor 5 protein.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.998
BcDW1_1807	PRT1	M7U768	M7TJP4	Putative eukaryotic translation initiation factor 5 protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.997
BcDW1_2186	BcDW1_1454	M7TZU4	M7V1A0	Putative eukaryotic translation initiation factor 2 beta subunit protein.	Putative eukaryotic translation initiation factor 2 alpha subunit protein.	0.999
BcDW1_2186	BcDW1_1807	M7TZU4	M7U768	Putative eukaryotic translation initiation factor 2 beta subunit protein.	Putative eukaryotic translation initiation factor 5 protein.	0.996
BcDW1_2186	BcDW1_9924	M7TZU4	M7TJV1	Putative eukaryotic translation initiation factor 2 beta subunit protein.	Putative eukaryotic translation initiation factor 2 subunit gamma protein.	0.999
BcDW1_2186	NIP1	M7TZU4	M7UF21	Putative eukaryotic translation initiation factor 2 beta subunit protein.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.994
BcDW1_2186	PRT1	M7TZU4	M7TJP4	Putative eukaryotic translation initiation factor 2 beta subunit protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.993
BcDW1_9924	BcDW1_1454	M7TJV1	M7V1A0	Putative eukaryotic translation initiation factor 2 subunit gamma protein.	Putative eukaryotic translation initiation factor 2 alpha subunit protein.	0.999
BcDW1_9924	BcDW1_1807	M7TJV1	M7U768	Putative eukaryotic translation initiation factor 2 subunit gamma protein.	Putative eukaryotic translation initiation factor 5 protein.	0.997
BcDW1_9924	BcDW1_2186	M7TJV1	M7TZU4	Putative eukaryotic translation initiation factor 2 subunit gamma protein.	Putative eukaryotic translation initiation factor 2 beta subunit protein.	0.999
BcDW1_9924	NIP1	M7TJV1	M7UF21	Putative eukaryotic translation initiation factor 2 subunit gamma protein.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.997
BcDW1_9924	PRT1	M7TJV1	M7TJP4	Putative eukaryotic translation initiation factor 2 subunit gamma protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.993