STRINGSTRING
TPE_0183 TPE_0183 TPE_0186 TPE_0186 TPE_0195 TPE_0195 TPE_0208 TPE_0208 TPE_1113 TPE_1113 TPE_2048 TPE_2048 TPE_2560 TPE_2560
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TPE_0183Lipopolysaccharide biosynthesis protein. (365 aa)
TPE_0186DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (350 aa)
TPE_0195UDP-N-acetylglucosamine 2-epimerase. (387 aa)
TPE_0208Nucleotide sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (440 aa)
TPE_1113Exopolysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family. (391 aa)
TPE_2048Aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (347 aa)
TPE_2560Capsular polysaccharide biosynthesis protein. (493 aa)
Your Current Organism:
Treponema pedis
NCBI taxonomy Id: 1291379
Other names: T. pedis str. T A4, Treponema pedis str. T A4
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