(16 nodes) MetI-like superfamily, and Peptide transport network (Treponema pedis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TPE_0131	Nickel ABC transporter ATPase. (215 aa)
	oppD	Oligopeptide ABC transporter ATP-bindingprotein; Belongs to the ABC transporter superfamily. (294 aa)
	TPE_0133	ABC transporter permease. (251 aa)
	TPE_0134	ABC transporter permease. (290 aa)
	TPE_0135	ABC transporter substrate-binding protein. (519 aa)
	TPE_0948	ABC transporter substrate-binding protein. (516 aa)
	TPE_0949	ABC transporter permease. (310 aa)
	TPE_0950	ABC transporter permease. (276 aa)
	TPE_0951	Peptide ABC transporter ATPase. (265 aa)
	TPE_0952	Peptide transport ATP-binding protein. (263 aa)
	TPE_0953	ABC transporter ATP-binding protein/permease. (578 aa)
	nikE	Nickel transporter ATP-binding protein NikE. (266 aa)
	nikC	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase. (252 aa)
	TPE_2550	Nickel transporter permease NikC. (269 aa)
	nikA	Nickel transport system permease protein NikB. (311 aa)
	TPE_2552	Nickel ABC transporter periplasmicnickel-binding protein. (514 aa)

Your Current Organism:

Treponema pedis

NCBI taxonomy Id: 1291379
Other names: T. pedis str. T A4, Treponema pedis str. T A4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TPE_0131	TPE_0133	TPE_0131	TPE_0133	Nickel ABC transporter ATPase.	ABC transporter permease.	0.924
TPE_0131	TPE_0134	TPE_0131	TPE_0134	Nickel ABC transporter ATPase.	ABC transporter permease.	0.824
TPE_0131	TPE_0135	TPE_0131	TPE_0135	Nickel ABC transporter ATPase.	ABC transporter substrate-binding protein.	0.623
TPE_0131	TPE_0949	TPE_0131	TPE_0949	Nickel ABC transporter ATPase.	ABC transporter permease.	0.591
TPE_0131	TPE_0950	TPE_0131	TPE_0950	Nickel ABC transporter ATPase.	ABC transporter permease.	0.721
TPE_0131	TPE_0951	TPE_0131	TPE_0951	Nickel ABC transporter ATPase.	Peptide ABC transporter ATPase.	0.944
TPE_0131	TPE_2550	TPE_0131	TPE_2550	Nickel ABC transporter ATPase.	Nickel transporter permease NikC.	0.747
TPE_0131	nikA	TPE_0131	TPE_2551	Nickel ABC transporter ATPase.	Nickel transport system permease protein NikB.	0.548
TPE_0131	nikC	TPE_0131	TPE_2549	Nickel ABC transporter ATPase.	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	0.433
TPE_0131	oppD	TPE_0131	TPE_0132	Nickel ABC transporter ATPase.	Oligopeptide ABC transporter ATP-bindingprotein; Belongs to the ABC transporter superfamily.	0.868
TPE_0133	TPE_0131	TPE_0133	TPE_0131	ABC transporter permease.	Nickel ABC transporter ATPase.	0.924
TPE_0133	TPE_0134	TPE_0133	TPE_0134	ABC transporter permease.	ABC transporter permease.	0.956
TPE_0133	TPE_0135	TPE_0133	TPE_0135	ABC transporter permease.	ABC transporter substrate-binding protein.	0.902
TPE_0133	TPE_0948	TPE_0133	TPE_0948	ABC transporter permease.	ABC transporter substrate-binding protein.	0.769
TPE_0133	TPE_0949	TPE_0133	TPE_0949	ABC transporter permease.	ABC transporter permease.	0.889
TPE_0133	TPE_0951	TPE_0133	TPE_0951	ABC transporter permease.	Peptide ABC transporter ATPase.	0.683
TPE_0133	TPE_0952	TPE_0133	TPE_0952	ABC transporter permease.	Peptide transport ATP-binding protein.	0.553
TPE_0133	TPE_2552	TPE_0133	TPE_2552	ABC transporter permease.	Nickel ABC transporter periplasmicnickel-binding protein.	0.675
TPE_0133	nikA	TPE_0133	TPE_2551	ABC transporter permease.	Nickel transport system permease protein NikB.	0.889
TPE_0133	nikC	TPE_0133	TPE_2549	ABC transporter permease.	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	0.793