STRINGSTRING
ykfD ykfD TPE_2089 TPE_2089 TPE_2090 TPE_2090 TPE_2091 TPE_2091 TPE_2092 TPE_2092
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ykfDOligopeptide ABC transporter ATPase; Belongs to the ABC transporter superfamily. (322 aa)
TPE_2089Peptide ABC transporter ATPase; Belongs to the ABC transporter superfamily. (343 aa)
TPE_2090Peptide ABC transporter permease. (305 aa)
TPE_2091Oligopeptide ABC transporter permease. (310 aa)
TPE_2092Oligopeptide ABC transporter substrate-bindingprotein. (546 aa)
Your Current Organism:
Treponema pedis
NCBI taxonomy Id: 1291379
Other names: T. pedis str. T A4, Treponema pedis str. T A4
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.