(30 nodes) MetI-like superfamily network (Treponema pedis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TPE_0501	Oligopeptide/dipeptide ABC transporter permease. (493 aa)
	TPE_0502	ABC transporter permease. (340 aa)
	TPE_0615	ABC transporter permease. (596 aa)
	TPE_0839	Oligopeptide/dipeptide ABC transporter permease. (308 aa)
	TPE_0840	Oligopeptide/dipeptide ABC transporter permease. (312 aa)
	TPE_0912	ABC transporter permease. (246 aa)
	TPE_0935	ABC transporter permease. (338 aa)
	TPE_0949	ABC transporter permease. (310 aa)
	TPE_0950	ABC transporter permease. (276 aa)
	TPE_1501	Phosphonate ABC transporter permease. (290 aa)
	TPE_1502	Phosphonate ABC transporter permease. (268 aa)
	TPE_1513	Binding-protein-dependent transport system innermembrane protein. (269 aa)
	TPE_1514	Nickel-transporting ATPase. (309 aa)
	TPE_2004	Oligopeptide transport system permease oppC. (230 aa)
	TPE_2005	Oligopeptide transport system permease oppB. (310 aa)
	TPE_2090	Peptide ABC transporter permease. (305 aa)
	TPE_2091	Oligopeptide ABC transporter permease. (310 aa)
	TPE_2140	Peptide ABC transporter permease. (316 aa)
	TPE_2141	Peptide ABC transporter permease. (275 aa)
	TPE_2453	Binding-protein-dependent transport system innermembrane protein. (641 aa)
	TPE_2454	Binding-protein-dependent transport system innermembrane protein. (294 aa)
	TPE_2512	Oligopeptide/dipeptide ABC transporter permease. (464 aa)
	TPE_2513	Oligopeptide/dipeptide ABC transporter permease. (346 aa)
	TPE_2550	Nickel transporter permease NikC. (269 aa)
	nikA	Nickel transport system permease protein NikB. (311 aa)
	TPE_0133	ABC transporter permease. (251 aa)
	TPE_0134	ABC transporter permease. (290 aa)
	TPE_0251	ABC transporter permease. (540 aa)
	TPE_0254	ABC transporter permease. (253 aa)
	TPE_0302	Thiamine ABC transporter permease. (558 aa)

Your Current Organism:

Treponema pedis

NCBI taxonomy Id: 1291379
Other names: T. pedis str. T A4, Treponema pedis str. T A4

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TPE_0133	TPE_0134	TPE_0133	TPE_0134	ABC transporter permease.	ABC transporter permease.	0.956
TPE_0133	TPE_0502	TPE_0133	TPE_0502	ABC transporter permease.	ABC transporter permease.	0.756
TPE_0133	TPE_0840	TPE_0133	TPE_0840	ABC transporter permease.	Oligopeptide/dipeptide ABC transporter permease.	0.866
TPE_0133	TPE_0949	TPE_0133	TPE_0949	ABC transporter permease.	ABC transporter permease.	0.889
TPE_0133	TPE_1514	TPE_0133	TPE_1514	ABC transporter permease.	Nickel-transporting ATPase.	0.888
TPE_0133	TPE_2005	TPE_0133	TPE_2005	ABC transporter permease.	Oligopeptide transport system permease oppB.	0.880
TPE_0133	TPE_2091	TPE_0133	TPE_2091	ABC transporter permease.	Oligopeptide ABC transporter permease.	0.861
TPE_0133	TPE_2140	TPE_0133	TPE_2140	ABC transporter permease.	Peptide ABC transporter permease.	0.887
TPE_0133	TPE_2513	TPE_0133	TPE_2513	ABC transporter permease.	Oligopeptide/dipeptide ABC transporter permease.	0.882
TPE_0133	nikA	TPE_0133	TPE_2551	ABC transporter permease.	Nickel transport system permease protein NikB.	0.889
TPE_0134	TPE_0133	TPE_0134	TPE_0133	ABC transporter permease.	ABC transporter permease.	0.956
TPE_0134	TPE_0501	TPE_0134	TPE_0501	ABC transporter permease.	Oligopeptide/dipeptide ABC transporter permease.	0.754
TPE_0134	TPE_0839	TPE_0134	TPE_0839	ABC transporter permease.	Oligopeptide/dipeptide ABC transporter permease.	0.871
TPE_0134	TPE_0950	TPE_0134	TPE_0950	ABC transporter permease.	ABC transporter permease.	0.888
TPE_0134	TPE_1513	TPE_0134	TPE_1513	ABC transporter permease.	Binding-protein-dependent transport system innermembrane protein.	0.887
TPE_0134	TPE_2004	TPE_0134	TPE_2004	ABC transporter permease.	Oligopeptide transport system permease oppC.	0.888
TPE_0134	TPE_2090	TPE_0134	TPE_2090	ABC transporter permease.	Peptide ABC transporter permease.	0.842
TPE_0134	TPE_2141	TPE_0134	TPE_2141	ABC transporter permease.	Peptide ABC transporter permease.	0.887
TPE_0134	TPE_2512	TPE_0134	TPE_2512	ABC transporter permease.	Oligopeptide/dipeptide ABC transporter permease.	0.829
TPE_0134	TPE_2550	TPE_0134	TPE_2550	ABC transporter permease.	Nickel transporter permease NikC.	0.888