(13 nodes) Solute-binding protein family 5 network (Treponema pedis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TPE_0499	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein. (673 aa)
	TPE_2517	Solute-binding family 5 protein. (538 aa)
	TPE_0948	ABC transporter substrate-binding protein. (516 aa)
	TPE_0986	Solute-binding family 5 protein. (545 aa)
	TPE_1515	Extracellular solute-binding protein. (509 aa)
	TPE_2006	Oligopeptide-binding protein oppA. (497 aa)
	TPE_2092	Oligopeptide ABC transporter substrate-bindingprotein. (546 aa)
	TPE_2139	Peptide ABC transporter periplasmic peptide-binding protein. (515 aa)
	TPE_2514	Lipoprotein. (866 aa)
	TPE_0500	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein. (641 aa)
	TPE_2552	Nickel ABC transporter periplasmicnickel-binding protein. (514 aa)
	TPE_0135	ABC transporter substrate-binding protein. (519 aa)
	TPE_0496	Oligopeptide/dipeptide ABC transporter peptide-binding protein. (652 aa)

Your Current Organism:

Treponema pedis

NCBI taxonomy Id: 1291379
Other names: T. pedis str. T A4, Treponema pedis str. T A4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
TPE_0135	TPE_0496	ABC transporter substrate-binding protein.	Oligopeptide/dipeptide ABC transporter peptide-binding protein.	0.523
TPE_0135	TPE_0499	ABC transporter substrate-binding protein.	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	0.509
TPE_0135	TPE_0500	ABC transporter substrate-binding protein.	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	0.471
TPE_0135	TPE_0948	ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.913
TPE_0135	TPE_2552	ABC transporter substrate-binding protein.	Nickel ABC transporter periplasmicnickel-binding protein.	0.928
TPE_0496	TPE_0135	Oligopeptide/dipeptide ABC transporter peptide-binding protein.	ABC transporter substrate-binding protein.	0.523
TPE_0496	TPE_0499	Oligopeptide/dipeptide ABC transporter peptide-binding protein.	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	0.951
TPE_0496	TPE_0500	Oligopeptide/dipeptide ABC transporter peptide-binding protein.	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	0.946
TPE_0496	TPE_0948	Oligopeptide/dipeptide ABC transporter peptide-binding protein.	ABC transporter substrate-binding protein.	0.480
TPE_0499	TPE_0135	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	ABC transporter substrate-binding protein.	0.509
TPE_0499	TPE_0496	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	Oligopeptide/dipeptide ABC transporter peptide-binding protein.	0.951
TPE_0499	TPE_0500	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	0.964
TPE_0499	TPE_2139	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	Peptide ABC transporter periplasmic peptide-binding protein.	0.416
TPE_0500	TPE_0135	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	ABC transporter substrate-binding protein.	0.471
TPE_0500	TPE_0496	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	Oligopeptide/dipeptide ABC transporter peptide-binding protein.	0.946
TPE_0500	TPE_0499	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	0.964
TPE_0500	TPE_0986	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	Solute-binding family 5 protein.	0.413
TPE_0500	TPE_1515	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	Extracellular solute-binding protein.	0.520
TPE_0500	TPE_2006	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	Oligopeptide-binding protein oppA.	0.556
TPE_0500	TPE_2092	Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein.	Oligopeptide ABC transporter substrate-bindingprotein.	0.413