(9 nodes) Periplasmic binding protein network (Treponema pedis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TPE_0048	Iron compound ABC transporter periplasmic iron compound-binding protein. (321 aa)
	TPE_0067	Iron compound ABC transporter periplasmic iron compound-binding protein. (311 aa)
	TPE_0289	Iron ABC transporter substrate-binding protein. (339 aa)
	TPE_0864	ABC transporter substrate-binding protein. (329 aa)
	TPE_1145	Iron compound ABC transporter periplasmic iron compound-binding protein. (313 aa)
	TPE_1469	Iron chelate uptake ABC transportersolute-binding protein. (337 aa)
	TPE_1650	Iron compound ABC transporter periplasmic iron compound-binding protein. (331 aa)
	TPE_2610	Periplasmic binding protein. (349 aa)
	TPE_2704	ABC transporter substrate-binding protein. (335 aa)

Your Current Organism:

Treponema pedis

NCBI taxonomy Id: 1291379
Other names: T. pedis str. T A4, Treponema pedis str. T A4

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
TPE_0289	TPE_0864	Iron ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.491
TPE_0289	TPE_1145	Iron ABC transporter substrate-binding protein.	Iron compound ABC transporter periplasmic iron compound-binding protein.	0.652
TPE_0289	TPE_1469	Iron ABC transporter substrate-binding protein.	Iron chelate uptake ABC transportersolute-binding protein.	0.435
TPE_0864	TPE_0289	ABC transporter substrate-binding protein.	Iron ABC transporter substrate-binding protein.	0.491
TPE_1145	TPE_0289	Iron compound ABC transporter periplasmic iron compound-binding protein.	Iron ABC transporter substrate-binding protein.	0.652
TPE_1145	TPE_1469	Iron compound ABC transporter periplasmic iron compound-binding protein.	Iron chelate uptake ABC transportersolute-binding protein.	0.503
TPE_1469	TPE_0289	Iron chelate uptake ABC transportersolute-binding protein.	Iron ABC transporter substrate-binding protein.	0.435
TPE_1469	TPE_1145	Iron chelate uptake ABC transportersolute-binding protein.	Iron compound ABC transporter periplasmic iron compound-binding protein.	0.503