(39 nodes) Mixed, incl. Protein secretion, and Protein of unknown function (DUF2931) network (Pseudomonas azotifigens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000425625_02808	Unannotated protein. (520 aa)
	GCA_000425625_02809	Unannotated protein. (168 aa)
	GCA_000425625_02810	Unannotated protein. (492 aa)
	GCA_000425625_02811	Unannotated protein. (135 aa)
	GCA_000425625_02812	Unannotated protein. (643 aa)
	GCA_000425625_02813	Unannotated protein. (211 aa)
	GCA_000425625_02814	Unannotated protein. (273 aa)
	GCA_000425625_02815	Unannotated protein. (596 aa)
	GCA_000425625_02816	Unannotated protein. (352 aa)
	GCA_000425625_03161	Unannotated protein. (214 aa)
	GCA_000425625_03162	Unannotated protein. (210 aa)
	GCA_000425625_03163	Unannotated protein. (213 aa)
	GCA_000425625_03164	Unannotated protein. (301 aa)
	GCA_000425625_03659	Unannotated protein. (301 aa)
	GCA_000425625_03660	Unannotated protein. (213 aa)
	GCA_000425625_03661	Unannotated protein. (214 aa)
	GCA_000425625_04298	Unannotated protein. (378 aa)
	GCA_000425625_04300	Unannotated protein. (282 aa)
	GCA_000425625_04301	Unannotated protein. (311 aa)
	GCA_000425625_04302	Unannotated protein. (141 aa)
	GCA_000425625_04303	Unannotated protein. (854 aa)
	GCA_000425625_04304	Unannotated protein. (324 aa)
	GCA_000425625_04305	Unannotated protein. (243 aa)
	GCA_000425625_04306	Unannotated protein. (1179 aa)
	GCA_000425625_04307	Unannotated protein. (288 aa)
	GCA_000425625_04308	Unannotated protein. (443 aa)
	GCA_000425625_04309	Unannotated protein. (161 aa)
	GCA_000425625_04310	Unannotated protein. (396 aa)
	GCA_000425625_04311	Unannotated protein. (44 aa)
	GCA_000425625_04312	Unannotated protein. (128 aa)
	GCA_000425625_04313	Unannotated protein. (40 aa)
	GCA_000425625_04314	Unannotated protein. (114 aa)
	GCA_000425625_04315	Unannotated protein. (415 aa)
	GCA_000425625_04316	Unannotated protein. (284 aa)
	GCA_000425625_04317	Unannotated protein. (173 aa)
	GCA_000425625_04539	Unannotated protein. (171 aa)
	GCA_000425625_04569	Unannotated protein. (1205 aa)
	GCA_000425625_04570	Unannotated protein. (292 aa)
	GCA_000425625_04571	Unannotated protein. (130 aa)

Your Current Organism:

Pseudomonas azotifigens

NCBI taxonomy Id: 1292027
Other names: P. azotifigens DSM 17556, Pseudomonas azotifigens DSM 17556

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000425625_02808	GCA_000425625_02809	Unannotated protein.	Unannotated protein.	0.991
GCA_000425625_02808	GCA_000425625_02810	Unannotated protein.	Unannotated protein.	0.987
GCA_000425625_02808	GCA_000425625_02811	Unannotated protein.	Unannotated protein.	0.977
GCA_000425625_02808	GCA_000425625_02812	Unannotated protein.	Unannotated protein.	0.900
GCA_000425625_02808	GCA_000425625_02813	Unannotated protein.	Unannotated protein.	0.591
GCA_000425625_02808	GCA_000425625_02814	Unannotated protein.	Unannotated protein.	0.591
GCA_000425625_02808	GCA_000425625_02815	Unannotated protein.	Unannotated protein.	0.938
GCA_000425625_02808	GCA_000425625_02816	Unannotated protein.	Unannotated protein.	0.990
GCA_000425625_02808	GCA_000425625_03164	Unannotated protein.	Unannotated protein.	0.687
GCA_000425625_02808	GCA_000425625_03659	Unannotated protein.	Unannotated protein.	0.685
GCA_000425625_02808	GCA_000425625_04303	Unannotated protein.	Unannotated protein.	0.958
GCA_000425625_02808	GCA_000425625_04304	Unannotated protein.	Unannotated protein.	0.704
GCA_000425625_02808	GCA_000425625_04305	Unannotated protein.	Unannotated protein.	0.679
GCA_000425625_02808	GCA_000425625_04306	Unannotated protein.	Unannotated protein.	0.927
GCA_000425625_02808	GCA_000425625_04307	Unannotated protein.	Unannotated protein.	0.860
GCA_000425625_02808	GCA_000425625_04308	Unannotated protein.	Unannotated protein.	0.941
GCA_000425625_02808	GCA_000425625_04309	Unannotated protein.	Unannotated protein.	0.857
GCA_000425625_02808	GCA_000425625_04310	Unannotated protein.	Unannotated protein.	0.847
GCA_000425625_02808	GCA_000425625_04317	Unannotated protein.	Unannotated protein.	0.957
GCA_000425625_02808	GCA_000425625_04539	Unannotated protein.	Unannotated protein.	0.929