(47 nodes) Spliceosomal snRNP complex, and SLBP independent Processing of Histone Pre-mRNAs network (Amazona aestiva)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

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protein homology

Your Input:
	AAES_160532	U4/U6 small nuclear ribonucleoprotein Prp4. (485 aa)
	AAES_158944	Putative ATP-dependent RNA helicase DDX23. (822 aa)
	AAES_157310	Zinc finger CCHC-type and RNA-binding motif-containing protein 1. (216 aa)
	AAES_128696	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
	AAES_111138	U2 small nuclear ribonucleoprotein B. (261 aa)
	AAES_111685	PHD finger-like domain-containing protein 5A-like protein. (110 aa)
	AAES_102516	WD repeat-containing protein 53. (353 aa)
	AAES_84824	Pre-mRNA-processing-splicing factor 8 isoform X3. (2097 aa)
	AAES_69774	Splicing factor 3B subunit 1-like protein. (91 aa)
	AAES_50834	Splicing factor 3B subunit 3. (1217 aa)
	AAES_42982	U4/U6 small nuclear ribonucleoprotein Prp3. (409 aa)
	AAES_41191	Uncharacterized protein. (1519 aa)
	AAES_166335	Splicing factor 3A subunit 1-like protein. (93 aa)
	AAES_162978	Microfibrillar-associated protein 1. (384 aa)
	AAES_00086	Splicing factor 3B subunit 6. (125 aa)
	AAES_33462	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
	AAES_166339	Splicing factor 3A subunit 1. (546 aa)
	AAES_106700	Nuclear cap-binding protein subunit 1. (604 aa)
	AAES_104777	U2 small nuclear ribonucleoprotein A. (255 aa)
	AAES_68403	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	AAES_118184	Splicing factor 3A subunit 2. (315 aa)
	AAES_57068	U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (277 aa)
	AAES_96495	RNA-binding protein 40. (524 aa)
	AAES_69749	Splicing factor 3B subunit 1. (1238 aa)
	AAES_36536	DUF1716 domain-containing protein. (738 aa)
	AAES_35878	Pre-mRNA-processing factor 6. (977 aa)
	AAES_188532	Small nuclear ribonucleoprotein-associated protein N. (181 aa)
	AAES_166240	Zinc finger matrin-type protein 5. (170 aa)
	AAES_150581	Transcription elongation regulator 1 isoform X2. (969 aa)
	AAES_43326	Pre-mRNA-splicing factor 38A. (312 aa)
	AAES_165714	ATP-dependent RNA helicase DDX42. (938 aa)
	AAES_151638	Spliceosome-associated protein CWC15 isoform X1. (257 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (161 aa)
	AAES_108041	Zinc finger, matrin type 2. (196 aa)
	AAES_83396	Pleiotropic regulator 1 isoform X1. (516 aa)
	AAES_74747	Uncharacterized protein. (700 aa)
	AAES_26222	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (182 aa)
	AAES_20162	Uncharacterized protein. (790 aa)
	AAES_17031	Small nuclear ribonucleoprotein Sm D3. (126 aa)
	AAES_16508	U5 small nuclear ribonucleoprotein 40 kDa protein. (356 aa)
	AAES_163190	U5 small nuclear ribonucleoprotein component. (799 aa)
	AAES_135929	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	AAES_79459	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	AAES_27389	WW domain-binding protein 11. (644 aa)
	AAES_31873	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	AAES_15876	U7 snRNA-associated Sm-like protein LSm10. (123 aa)
	AAES_172926	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (95 aa)

Your Current Organism:

Amazona aestiva

NCBI taxonomy Id: 12930
Other names: A. aestiva, blue-fronted amazon

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAES_00086	AAES_102516	A0A0Q3PAM3	A0A0Q3M9Z2	Splicing factor 3B subunit 6.	WD repeat-containing protein 53.	0.511
AAES_00086	AAES_104777	A0A0Q3PAM3	A0A0Q3PFM4	Splicing factor 3B subunit 6.	U2 small nuclear ribonucleoprotein A.	0.984
AAES_00086	AAES_106700	A0A0Q3PAM3	A0A0Q3PEA5	Splicing factor 3B subunit 6.	Nuclear cap-binding protein subunit 1.	0.741
AAES_00086	AAES_108041	A0A0Q3PAM3	A0A0Q3TFB5	Splicing factor 3B subunit 6.	Zinc finger, matrin type 2.	0.667
AAES_00086	AAES_111138	A0A0Q3PAM3	A0A0Q3M8J8	Splicing factor 3B subunit 6.	U2 small nuclear ribonucleoprotein B.	0.992
AAES_00086	AAES_111685	A0A0Q3PAM3	A0A0Q3M905	Splicing factor 3B subunit 6.	PHD finger-like domain-containing protein 5A-like protein.	0.999
AAES_00086	AAES_118184	A0A0Q3PAM3	A0A0Q3PQ01	Splicing factor 3B subunit 6.	Splicing factor 3A subunit 2.	0.997
AAES_00086	AAES_128696	A0A0Q3PAM3	A0A0Q3M390	Splicing factor 3B subunit 6.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.770
AAES_00086	AAES_135929	A0A0Q3PAM3	A0A0Q3UQS8	Splicing factor 3B subunit 6.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.572
AAES_00086	AAES_150581	A0A0Q3PAM3	A0A0Q3QV63	Splicing factor 3B subunit 6.	Transcription elongation regulator 1 isoform X2.	0.947
AAES_00086	AAES_151638	A0A0Q3PAM3	A0A0Q3T2T5	Splicing factor 3B subunit 6.	Spliceosome-associated protein CWC15 isoform X1.	0.739
AAES_00086	AAES_157310	A0A0Q3PAM3	A0A0Q3LVH9	Splicing factor 3B subunit 6.	Zinc finger CCHC-type and RNA-binding motif-containing protein 1.	0.788
AAES_00086	AAES_15876	A0A0Q3PAM3	A0A0Q3X9Q6	Splicing factor 3B subunit 6.	U7 snRNA-associated Sm-like protein LSm10.	0.875
AAES_00086	AAES_158944	A0A0Q3PAM3	A0A0Q3LUB7	Splicing factor 3B subunit 6.	Putative ATP-dependent RNA helicase DDX23.	0.787
AAES_00086	AAES_160532	A0A0Q3PAM3	A0A0Q3LTW0	Splicing factor 3B subunit 6.	U4/U6 small nuclear ribonucleoprotein Prp4.	0.644
AAES_00086	AAES_162978	A0A0Q3PAM3	A0A0Q3P057	Splicing factor 3B subunit 6.	Microfibrillar-associated protein 1.	0.991
AAES_00086	AAES_163190	A0A0Q3PAM3	A0A0Q3UPX0	Splicing factor 3B subunit 6.	U5 small nuclear ribonucleoprotein component.	0.792
AAES_00086	AAES_16508	A0A0Q3PAM3	A0A0Q3U4F1	Splicing factor 3B subunit 6.	U5 small nuclear ribonucleoprotein 40 kDa protein.	0.717
AAES_00086	AAES_165714	A0A0Q3PAM3	A0A0Q3SZ79	Splicing factor 3B subunit 6.	ATP-dependent RNA helicase DDX42.	0.975
AAES_00086	AAES_166240	A0A0Q3PAM3	A0A0Q3QK48	Splicing factor 3B subunit 6.	Zinc finger matrin-type protein 5.	0.797