(8 nodes) pre-mRNA intronic binding network (Amazona aestiva)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AAES_97004	RNA-binding protein 20. (567 aa)
	AAES_96998	RRM domain-containing protein. (155 aa)
	AAES_84824	Pre-mRNA-processing-splicing factor 8 isoform X3. (2097 aa)
	AAES_111577	Histone acetyltransferase p300. (2447 aa)
	AAES_96996	Uncharacterized protein. (350 aa)
	AAES_66781	RNA-binding protein 24 isoform X1. (225 aa)
	AAES_84863	Prpf8 protein. (184 aa)
	AAES_96495	RNA-binding protein 40. (524 aa)

Your Current Organism:

Amazona aestiva

NCBI taxonomy Id: 12930
Other names: A. aestiva, blue-fronted amazon

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAES_84824	AAES_84863	A0A0Q3MFQ4	A0A0Q3R701	Pre-mRNA-processing-splicing factor 8 isoform X3.	Prpf8 protein.	0.931
AAES_84824	AAES_96495	A0A0Q3MFQ4	A0A0Q3PVQ1	Pre-mRNA-processing-splicing factor 8 isoform X3.	RNA-binding protein 40.	0.808
AAES_84863	AAES_84824	A0A0Q3R701	A0A0Q3MFQ4	Prpf8 protein.	Pre-mRNA-processing-splicing factor 8 isoform X3.	0.931
AAES_84863	AAES_96495	A0A0Q3R701	A0A0Q3PVQ1	Prpf8 protein.	RNA-binding protein 40.	0.808
AAES_96495	AAES_84824	A0A0Q3PVQ1	A0A0Q3MFQ4	RNA-binding protein 40.	Pre-mRNA-processing-splicing factor 8 isoform X3.	0.808
AAES_96495	AAES_84863	A0A0Q3PVQ1	A0A0Q3R701	RNA-binding protein 40.	Prpf8 protein.	0.808
AAES_96996	AAES_96998	A0A0Q3US66	A0A0Q3PHI7	Uncharacterized protein.	RRM domain-containing protein.	0.939
AAES_96996	AAES_97004	A0A0Q3US66	A0A0Q3PW30	Uncharacterized protein.	RNA-binding protein 20.	0.805
AAES_96998	AAES_96996	A0A0Q3PHI7	A0A0Q3US66	RRM domain-containing protein.	Uncharacterized protein.	0.939
AAES_96998	AAES_97004	A0A0Q3PHI7	A0A0Q3PW30	RRM domain-containing protein.	RNA-binding protein 20.	0.783
AAES_97004	AAES_96996	A0A0Q3PW30	A0A0Q3US66	RNA-binding protein 20.	Uncharacterized protein.	0.805
AAES_97004	AAES_96998	A0A0Q3PW30	A0A0Q3PHI7	RNA-binding protein 20.	RRM domain-containing protein.	0.783