(29 nodes) Response to topologically incorrect protein network (Cryptococcus amylolentus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L202_08292	Uncharacterized protein. (944 aa)
	L202_07447	Chaperone DnaK; Belongs to the heat shock protein 70 family. (674 aa)
	L202_06894	Uncharacterized protein; Belongs to the BI1 family. (282 aa)
	L202_07117	J domain-containing protein. (441 aa)
	L202_07452	OTU domain-containing protein. (326 aa)
	L202_06405	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (457 aa)
	L202_06395	Uncharacterized protein. (520 aa)
	L202_06409	Uncharacterized protein. (365 aa)
	L202_06570	Ubiquitin carboxyl-terminal hydrolase. (167 aa)
	L202_06569	Uncharacterized protein. (166 aa)
	L202_06625	Uncharacterized protein. (370 aa)
	L202_05784	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (790 aa)
	L202_05306	bVLRF1 domain-containing protein. (693 aa)
	L202_03314	Uncharacterized protein. (487 aa)
	L202_03409	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (810 aa)
	L202_03499	PRKCSH domain-containing protein. (521 aa)
	L202_03407	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (268 aa)
	L202_03448	Uncharacterized protein. (395 aa)
	L202_02747	Chaperone DnaK; Belongs to the heat shock protein 70 family. (666 aa)
	L202_02285	Uncharacterized protein. (276 aa)
	L202_01433	Uncharacterized protein. (881 aa)
	L202_01316	RING-type domain-containing protein. (559 aa)
	L202_01514	Uncharacterized protein. (644 aa)
	L202_00469	Hsp72-like protein; Belongs to the heat shock protein 70 family. (643 aa)
	L202_00500	Hsp71-like protein; Belongs to the heat shock protein 70 family. (647 aa)
	L202_00491	Nuclear protein localization protein 4. (681 aa)
	L202_00623	Uncharacterized protein. (924 aa)
	L202_00578	Uncharacterized protein. (1083 aa)
	L202_00713	Uncharacterized protein. (1556 aa)

Your Current Organism:

Cryptococcus amylolentus

NCBI taxonomy Id: 1295533
Other names: C. amylolentus CBS 6039, Cryptococcus amylolentus CBS 6039, Cryptococcus amylolentus CBS6039

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L202_00469	L202_02747	A0A1E3I7C6	A0A1E3HW43	Hsp72-like protein; Belongs to the heat shock protein 70 family.	Chaperone DnaK; Belongs to the heat shock protein 70 family.	0.801
L202_00469	L202_03407	A0A1E3I7C6	A0A1E3HUJ5	Hsp72-like protein; Belongs to the heat shock protein 70 family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.400
L202_00469	L202_03409	A0A1E3I7C6	A0A1E3HST2	Hsp72-like protein; Belongs to the heat shock protein 70 family.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.711
L202_00469	L202_03499	A0A1E3I7C6	A0A1E3HT90	Hsp72-like protein; Belongs to the heat shock protein 70 family.	PRKCSH domain-containing protein.	0.401
L202_00469	L202_06395	A0A1E3I7C6	A0A1E3HFU1	Hsp72-like protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.727
L202_00469	L202_06625	A0A1E3I7C6	A0A1E3HGM4	Hsp72-like protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.883
L202_00469	L202_07117	A0A1E3I7C6	A0A1E3HEN4	Hsp72-like protein; Belongs to the heat shock protein 70 family.	J domain-containing protein.	0.831
L202_00469	L202_07447	A0A1E3I7C6	A0A1E3HC95	Hsp72-like protein; Belongs to the heat shock protein 70 family.	Chaperone DnaK; Belongs to the heat shock protein 70 family.	0.837
L202_00491	L202_03314	A0A1E3I7M3	A0A1E3HSL0	Nuclear protein localization protein 4.	Uncharacterized protein.	0.999
L202_00491	L202_03407	A0A1E3I7M3	A0A1E3HUJ5	Nuclear protein localization protein 4.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.952
L202_00491	L202_03409	A0A1E3I7M3	A0A1E3HST2	Nuclear protein localization protein 4.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.998
L202_00491	L202_03499	A0A1E3I7M3	A0A1E3HT90	Nuclear protein localization protein 4.	PRKCSH domain-containing protein.	0.525
L202_00491	L202_05306	A0A1E3I7M3	A0A1E3HMK3	Nuclear protein localization protein 4.	bVLRF1 domain-containing protein.	0.508
L202_00491	L202_07452	A0A1E3I7M3	A0A1E3HEU0	Nuclear protein localization protein 4.	OTU domain-containing protein.	0.961
L202_00500	L202_02747	A0A1E3I7H0	A0A1E3HW43	Hsp71-like protein; Belongs to the heat shock protein 70 family.	Chaperone DnaK; Belongs to the heat shock protein 70 family.	0.801
L202_00500	L202_03407	A0A1E3I7H0	A0A1E3HUJ5	Hsp71-like protein; Belongs to the heat shock protein 70 family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.400
L202_00500	L202_03409	A0A1E3I7H0	A0A1E3HST2	Hsp71-like protein; Belongs to the heat shock protein 70 family.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.711
L202_00500	L202_03499	A0A1E3I7H0	A0A1E3HT90	Hsp71-like protein; Belongs to the heat shock protein 70 family.	PRKCSH domain-containing protein.	0.401
L202_00500	L202_06395	A0A1E3I7H0	A0A1E3HFU1	Hsp71-like protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.727
L202_00500	L202_06625	A0A1E3I7H0	A0A1E3HGM4	Hsp71-like protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.883