(18 nodes) Proteasome assembly network (Cryptococcus amylolentus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L202_03596	26S protease regulatory subunit 8; Belongs to the AAA ATPase family. (398 aa)
	L202_05002	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family. (467 aa)
	L202_04935	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (997 aa)
	L202_05965	Proteasome assembly chaperone 2; Involved in 20S proteasome assembly. Belongs to the PSMG2 family. (267 aa)
	L202_05942	ANK_REP_REGION domain-containing protein. (236 aa)
	L202_06864	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (290 aa)
	L202_07486	Uncharacterized protein. (102 aa)
	L202_07305	VWFA domain-containing protein. (380 aa)
	L202_08293	26S protease regulatory subunit 7; Belongs to the AAA ATPase family. (450 aa)
	L202_07855	Uncharacterized protein. (197 aa)
	L202_00739	WD_REPEATS_REGION domain-containing protein. (426 aa)
	L202_00901	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family. (407 aa)
	L202_01406	26S protease regulatory subunit 6B, variant; Belongs to the AAA ATPase family. (414 aa)
	L202_01317	Pre-rRNA-processing protein PNO1. (259 aa)
	L202_02347	PDZ domain-containing protein. (232 aa)
	L202_02226	Uncharacterized protein. (157 aa)
	L202_03724	MPN domain-containing protein. (309 aa)
	L202_04264	26S protease regulatory subunit 4; Belongs to the AAA ATPase family. (438 aa)

Your Current Organism:

Cryptococcus amylolentus

NCBI taxonomy Id: 1295533
Other names: C. amylolentus CBS 6039, Cryptococcus amylolentus CBS 6039, Cryptococcus amylolentus CBS6039

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L202_00739	L202_00901	A0A1E3IAG8	A0A1E3I8N4	WD_REPEATS_REGION domain-containing protein.	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	0.638
L202_00739	L202_01406	A0A1E3IAG8	A0A1E3I3Q4	WD_REPEATS_REGION domain-containing protein.	26S protease regulatory subunit 6B, variant; Belongs to the AAA ATPase family.	0.942
L202_00739	L202_02347	A0A1E3IAG8	A0A1E3I2E3	WD_REPEATS_REGION domain-containing protein.	PDZ domain-containing protein.	0.730
L202_00739	L202_03596	A0A1E3IAG8	A0A1E3HTG8	WD_REPEATS_REGION domain-containing protein.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.988
L202_00739	L202_03724	A0A1E3IAG8	A0A1E3HTZ0	WD_REPEATS_REGION domain-containing protein.	MPN domain-containing protein.	0.936
L202_00739	L202_04264	A0A1E3IAG8	A0A1E3HTA3	WD_REPEATS_REGION domain-containing protein.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.853
L202_00739	L202_04935	A0A1E3IAG8	A0A1E3HNA8	WD_REPEATS_REGION domain-containing protein.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.592
L202_00739	L202_05002	A0A1E3IAG8	A0A1E3HP23	WD_REPEATS_REGION domain-containing protein.	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family.	0.927
L202_00739	L202_05942	A0A1E3IAG8	A0A1E3HI04	WD_REPEATS_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.989
L202_00739	L202_07305	A0A1E3IAG8	A0A1E3HBR8	WD_REPEATS_REGION domain-containing protein.	VWFA domain-containing protein.	0.690
L202_00739	L202_08293	A0A1E3IAG8	A0A1E3HAS6	WD_REPEATS_REGION domain-containing protein.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.930
L202_00901	L202_00739	A0A1E3I8N4	A0A1E3IAG8	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	WD_REPEATS_REGION domain-containing protein.	0.638
L202_00901	L202_01406	A0A1E3I8N4	A0A1E3I3Q4	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6B, variant; Belongs to the AAA ATPase family.	0.999
L202_00901	L202_02226	A0A1E3I8N4	A0A1E3I0L8	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.536
L202_00901	L202_02347	A0A1E3I8N4	A0A1E3I2E3	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	PDZ domain-containing protein.	0.996
L202_00901	L202_03596	A0A1E3I8N4	A0A1E3HTG8	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
L202_00901	L202_03724	A0A1E3I8N4	A0A1E3HTZ0	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	MPN domain-containing protein.	0.999
L202_00901	L202_04264	A0A1E3I8N4	A0A1E3HTA3	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.999
L202_00901	L202_04935	A0A1E3I8N4	A0A1E3HNA8	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.998
L202_00901	L202_05002	A0A1E3I8N4	A0A1E3HP23	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family.	0.999