(12 nodes) Calnexin/calreticulin cycle network (Cryptococcus amylolentus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L202_06836	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (601 aa)
	L202_05784	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (790 aa)
	L202_07083	RING-CH-type domain-containing protein. (1500 aa)
	L202_00713	Uncharacterized protein. (1556 aa)
	L202_00217	CIA30 domain-containing protein. (281 aa)
	L202_01549	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (971 aa)
	L202_02060	Ubiquitin-like domain-containing protein. (158 aa)
	L202_02569	Uncharacterized protein. (283 aa)
	L202_02002	Polyubiquitin. (988 aa)
	L202_03999	Uncharacterized protein. (558 aa)
	L202_05879	Polyubiquitin-C, variant. (533 aa)
	L202_08384	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (877 aa)

Your Current Organism:

Cryptococcus amylolentus

NCBI taxonomy Id: 1295533
Other names: C. amylolentus CBS 6039, Cryptococcus amylolentus CBS 6039, Cryptococcus amylolentus CBS6039

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L202_00217	L202_02002	A0A1E3I6V1	A0A1E3HZ29	CIA30 domain-containing protein.	Polyubiquitin.	0.908
L202_00217	L202_05879	A0A1E3I6V1	A0A1E3HKA8	CIA30 domain-containing protein.	Polyubiquitin-C, variant.	0.908
L202_00713	L202_01549	A0A1E3I8Z4	A0A1E3I6E8	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	0.671
L202_00713	L202_02569	A0A1E3I8Z4	A0A1E3I116	Uncharacterized protein.	Uncharacterized protein.	0.607
L202_00713	L202_03999	A0A1E3I8Z4	A0A1E3HPV1	Uncharacterized protein.	Uncharacterized protein.	0.712
L202_01549	L202_00713	A0A1E3I6E8	A0A1E3I8Z4	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Uncharacterized protein.	0.671
L202_01549	L202_03999	A0A1E3I6E8	A0A1E3HPV1	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Uncharacterized protein.	0.930
L202_01549	L202_06836	A0A1E3I6E8	A0A1E3HDL2	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.900
L202_01549	L202_08384	A0A1E3I6E8	A0A1E3HB35	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.781
L202_02002	L202_00217	A0A1E3HZ29	A0A1E3I6V1	Polyubiquitin.	CIA30 domain-containing protein.	0.908
L202_02002	L202_02060	A0A1E3HZ29	A0A1E3I1G2	Polyubiquitin.	Ubiquitin-like domain-containing protein.	0.944
L202_02002	L202_07083	A0A1E3HZ29	A0A1E3HEJ5	Polyubiquitin.	RING-CH-type domain-containing protein.	0.537
L202_02060	L202_02002	A0A1E3I1G2	A0A1E3HZ29	Ubiquitin-like domain-containing protein.	Polyubiquitin.	0.944
L202_02060	L202_05879	A0A1E3I1G2	A0A1E3HKA8	Ubiquitin-like domain-containing protein.	Polyubiquitin-C, variant.	0.944
L202_02569	L202_00713	A0A1E3I116	A0A1E3I8Z4	Uncharacterized protein.	Uncharacterized protein.	0.607
L202_02569	L202_03999	A0A1E3I116	A0A1E3HPV1	Uncharacterized protein.	Uncharacterized protein.	0.832
L202_02569	L202_06836	A0A1E3I116	A0A1E3HDL2	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.520
L202_02569	L202_08384	A0A1E3I116	A0A1E3HB35	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.520
L202_03999	L202_00713	A0A1E3HPV1	A0A1E3I8Z4	Uncharacterized protein.	Uncharacterized protein.	0.712
L202_03999	L202_01549	A0A1E3HPV1	A0A1E3I6E8	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	0.930