(14 nodes) Mixed, incl. mRNA 3-UTR binding, and HEAT-like repeat network (Atta cephalotes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158NBV2	Uncharacterized protein. (292 aa)
	A0A158NCB8	RRM domain-containing protein. (432 aa)
	A0A158NCV7	RRM domain-containing protein. (427 aa)
	A0A158ND26	Uncharacterized protein. (461 aa)
	A0A158NDW0	Uncharacterized protein. (373 aa)
	A0A158NF35	Uncharacterized protein. (335 aa)
	A0A158NIX0	Importin N-terminal domain-containing protein. (775 aa)
	A0A158NK17	RRM domain-containing protein. (337 aa)
	A0A158NNX4	Uncharacterized protein. (976 aa)
	A0A158NRC2	Uncharacterized protein. (339 aa)
	A0A158NSJ2	Uncharacterized protein. (885 aa)
	A0A158NTC3	RRM domain-containing protein. (288 aa)
	A0A158NV28	RRM domain-containing protein. (530 aa)
	A0A158NV68	HTH La-type RNA-binding domain-containing protein. (851 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158NBV2	A0A158ND26	Uncharacterized protein.	Uncharacterized protein.	0.588
A0A158NBV2	A0A158NF35	Uncharacterized protein.	Uncharacterized protein.	0.903
A0A158NBV2	A0A158NIX0	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.495
A0A158NBV2	A0A158NNX4	Uncharacterized protein.	Uncharacterized protein.	0.609
A0A158NBV2	A0A158NRC2	Uncharacterized protein.	Uncharacterized protein.	0.903
A0A158NCV7	A0A158NF35	RRM domain-containing protein.	Uncharacterized protein.	0.411
A0A158NCV7	A0A158NTC3	RRM domain-containing protein.	RRM domain-containing protein.	0.718
A0A158ND26	A0A158NBV2	Uncharacterized protein.	Uncharacterized protein.	0.588
A0A158ND26	A0A158NF35	Uncharacterized protein.	Uncharacterized protein.	0.655
A0A158ND26	A0A158NIX0	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.550
A0A158ND26	A0A158NK17	Uncharacterized protein.	RRM domain-containing protein.	0.915
A0A158ND26	A0A158NNX4	Uncharacterized protein.	Uncharacterized protein.	0.829
A0A158ND26	A0A158NRC2	Uncharacterized protein.	Uncharacterized protein.	0.653
A0A158ND26	A0A158NV28	Uncharacterized protein.	RRM domain-containing protein.	0.407
A0A158NDW0	A0A158NK17	Uncharacterized protein.	RRM domain-containing protein.	0.431
A0A158NDW0	A0A158NRC2	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A158NDW0	A0A158NTC3	Uncharacterized protein.	RRM domain-containing protein.	0.471
A0A158NF35	A0A158NBV2	Uncharacterized protein.	Uncharacterized protein.	0.903
A0A158NF35	A0A158NCV7	Uncharacterized protein.	RRM domain-containing protein.	0.411
A0A158NF35	A0A158ND26	Uncharacterized protein.	Uncharacterized protein.	0.655