(13 nodes) Integrator complex network (Atta cephalotes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158N920	Uncharacterized protein. (961 aa)
	A0A158NEL6	Uncharacterized protein. (676 aa)
	A0A158NEM5	Uncharacterized protein. (1085 aa)
	A0A158NGN0	VWFA domain-containing protein. (988 aa)
	A0A158NK46	Uncharacterized protein. (929 aa)
	A0A158NK72	DUF3677 domain-containing protein. (2074 aa)
	A0A158NMG2	Beta-Casp domain-containing protein. (662 aa)
	A0A158NPM6	Uncharacterized protein. (1113 aa)
	A0A158NR00	PHD-type domain-containing protein. (263 aa)
	A0A158P1T9	Uncharacterized protein. (630 aa)
	A0A158P276	Uncharacterized protein. (595 aa)
	A0A158P2N5	PHD-type domain-containing protein. (252 aa)
	A0A158P3V2	Uncharacterized protein. (917 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158N920	A0A158NEL6	Uncharacterized protein.	Uncharacterized protein.	0.936
A0A158N920	A0A158NEM5	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A158N920	A0A158NGN0	Uncharacterized protein.	VWFA domain-containing protein.	0.966
A0A158N920	A0A158NK46	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A158N920	A0A158NK72	Uncharacterized protein.	DUF3677 domain-containing protein.	0.999
A0A158N920	A0A158NMG2	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.977
A0A158N920	A0A158NPM6	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A158N920	A0A158NR00	Uncharacterized protein.	PHD-type domain-containing protein.	0.720
A0A158N920	A0A158P1T9	Uncharacterized protein.	Uncharacterized protein.	0.948
A0A158N920	A0A158P276	Uncharacterized protein.	Uncharacterized protein.	0.979
A0A158N920	A0A158P2N5	Uncharacterized protein.	PHD-type domain-containing protein.	0.720
A0A158N920	A0A158P3V2	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A158NEL6	A0A158N920	Uncharacterized protein.	Uncharacterized protein.	0.936
A0A158NEL6	A0A158NEM5	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A158NEL6	A0A158NGN0	Uncharacterized protein.	VWFA domain-containing protein.	0.957
A0A158NEL6	A0A158NK46	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A158NEL6	A0A158NK72	Uncharacterized protein.	DUF3677 domain-containing protein.	0.996
A0A158NEL6	A0A158NMG2	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.941
A0A158NEL6	A0A158NPM6	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A158NEL6	A0A158NR00	Uncharacterized protein.	PHD-type domain-containing protein.	0.727