(47 nodes) Mixed, incl. CDC42 GTPase cycle, and Small GTPase Rho network (Atta cephalotes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158N932	Uncharacterized protein. (475 aa)
	A0A158NDX7	BHLH domain-containing protein. (2400 aa)
	A0A158NEC6	Uncharacterized protein. (1094 aa)
	A0A158NEN1	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2301 aa)
	A0A158NHK5	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. (126 aa)
	A0A158NHY3	LIM zinc-binding domain-containing protein. (812 aa)
	A0A158NI52	Uncharacterized protein. (191 aa)
	A0A158NIU2	Uncharacterized protein. (1087 aa)
	A0A158NIZ6	Uncharacterized protein. (1199 aa)
	A0A158NJF7	Uncharacterized protein. (3063 aa)
	A0A158NJL5	Rho-GAP domain-containing protein. (897 aa)
	A0A158NKA8	BAR domain-containing protein. (266 aa)
	A0A158NKD5	Uncharacterized protein. (1193 aa)
	A0A158NKH8	WH2 domain-containing protein. (444 aa)
	A0A158NKK1	Uncharacterized protein. (187 aa)
	A0A158NKY9	Non-specific serine/threonine protein kinase. (586 aa)
	A0A158NL62	Uncharacterized protein. (1756 aa)
	A0A158NMV6	Uncharacterized protein. (523 aa)
	A0A158NNA5	Uncharacterized protein. (285 aa)
	A0A158NNE4	Uncharacterized protein. (1312 aa)
	A0A158NNE7	Uncharacterized protein. (1043 aa)
	A0A158NP91	Uncharacterized protein. (1810 aa)
	A0A158NQC2	Rho-GAP domain-containing protein. (632 aa)
	A0A158NR15	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1168 aa)
	A0A158NRQ5	Uncharacterized protein. (740 aa)
	A0A158NRT3	Uncharacterized protein. (192 aa)
	A0A158NRW3	Non-specific serine/threonine protein kinase. (672 aa)
	A0A158NRZ0	Uncharacterized protein. (1025 aa)
	A0A158NSH9	Uncharacterized protein. (192 aa)
	A0A158NSI4	Uncharacterized protein. (244 aa)
	A0A158NSN3	Uncharacterized protein. (674 aa)
	A0A158NSR8	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1764 aa)
	A0A158NTJ8	Uncharacterized protein. (191 aa)
	A0A158NTK8	Uncharacterized protein. (979 aa)
	A0A158NU55	Uncharacterized protein. (1084 aa)
	A0A158NUK2	BTB domain-containing protein. (622 aa)
	A0A158NV61	Uncharacterized protein. (694 aa)
	A0A158NWB1	Uncharacterized protein. (1643 aa)
	A0A158NWF6	Non-specific serine/threonine protein kinase. (524 aa)
	A0A158NXF9	CRAL-TRIO domain-containing protein. (233 aa)
	A0A158NY32	PH domain-containing protein. (1198 aa)
	A0A158NYK4	FH2 domain-containing protein. (1296 aa)
	A0A158NZ36	Rho-GAP domain-containing protein. (262 aa)
	A0A158NZV1	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1371 aa)
	A0A158P1D2	Uncharacterized protein. (421 aa)
	A0A158P3R1	Uncharacterized protein. (2161 aa)
	A0A158P3W9	Uncharacterized protein. (195 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158N932	A0A158NKH8	Uncharacterized protein.	WH2 domain-containing protein.	0.457
A0A158N932	A0A158NMV6	Uncharacterized protein.	Uncharacterized protein.	0.810
A0A158N932	A0A158NP91	Uncharacterized protein.	Uncharacterized protein.	0.852
A0A158N932	A0A158NTK8	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A158NDX7	A0A158NEC6	BHLH domain-containing protein.	Uncharacterized protein.	0.406
A0A158NDX7	A0A158NEN1	BHLH domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.683
A0A158NDX7	A0A158NHK5	BHLH domain-containing protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.729
A0A158NDX7	A0A158NI52	BHLH domain-containing protein.	Uncharacterized protein.	0.407
A0A158NDX7	A0A158NKK1	BHLH domain-containing protein.	Uncharacterized protein.	0.407
A0A158NDX7	A0A158NNA5	BHLH domain-containing protein.	Uncharacterized protein.	0.407
A0A158NDX7	A0A158NP91	BHLH domain-containing protein.	Uncharacterized protein.	0.416
A0A158NDX7	A0A158NRQ5	BHLH domain-containing protein.	Uncharacterized protein.	0.407
A0A158NDX7	A0A158NRT3	BHLH domain-containing protein.	Uncharacterized protein.	0.407
A0A158NDX7	A0A158NSH9	BHLH domain-containing protein.	Uncharacterized protein.	0.407
A0A158NDX7	A0A158NTJ8	BHLH domain-containing protein.	Uncharacterized protein.	0.407
A0A158NDX7	A0A158NTK8	BHLH domain-containing protein.	Uncharacterized protein.	0.541
A0A158NDX7	A0A158NWB1	BHLH domain-containing protein.	Uncharacterized protein.	0.515
A0A158NDX7	A0A158P3W9	BHLH domain-containing protein.	Uncharacterized protein.	0.407
A0A158NEC6	A0A158NDX7	Uncharacterized protein.	BHLH domain-containing protein.	0.406
A0A158NEC6	A0A158NEN1	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.936