(10 nodes) Myosin II complex, and Troponin network (Atta cephalotes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158NBF7	Uncharacterized protein. (218 aa)
	A0A158NDY9	Uncharacterized protein. (406 aa)
	A0A158NE93	Transgelin; Belongs to the calponin family. (184 aa)
	A0A158NF01	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1775 aa)
	A0A158NL29	Uncharacterized protein. (174 aa)
	A0A158NMS1	Uncharacterized protein. (346 aa)
	A0A158NMZ6	Uncharacterized protein. (194 aa)
	A0A158NSB6	Uncharacterized protein; Belongs to the tropomyosin family. (284 aa)
	A0A158NWN4	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (230 aa)
	A0A158P2F1	Myosin_tail_1 domain-containing protein. (877 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158NBF7	A0A158NDY9	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A158NBF7	A0A158NE93	Uncharacterized protein.	Transgelin; Belongs to the calponin family.	0.680
A0A158NBF7	A0A158NF01	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.764
A0A158NBF7	A0A158NL29	Uncharacterized protein.	Uncharacterized protein.	0.740
A0A158NBF7	A0A158NMS1	Uncharacterized protein.	Uncharacterized protein.	0.948
A0A158NBF7	A0A158NMZ6	Uncharacterized protein.	Uncharacterized protein.	0.948
A0A158NBF7	A0A158NSB6	Uncharacterized protein.	Uncharacterized protein; Belongs to the tropomyosin family.	0.735
A0A158NBF7	A0A158NWN4	Uncharacterized protein.	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.764
A0A158NBF7	A0A158P2F1	Uncharacterized protein.	Myosin_tail_1 domain-containing protein.	0.855
A0A158NDY9	A0A158NBF7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A158NDY9	A0A158NE93	Uncharacterized protein.	Transgelin; Belongs to the calponin family.	0.879
A0A158NDY9	A0A158NF01	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.714
A0A158NDY9	A0A158NL29	Uncharacterized protein.	Uncharacterized protein.	0.710
A0A158NDY9	A0A158NMS1	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A158NDY9	A0A158NMZ6	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A158NDY9	A0A158NSB6	Uncharacterized protein.	Uncharacterized protein; Belongs to the tropomyosin family.	0.820
A0A158NDY9	A0A158NWN4	Uncharacterized protein.	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.714
A0A158NDY9	A0A158P2F1	Uncharacterized protein.	Myosin_tail_1 domain-containing protein.	0.951
A0A158NE93	A0A158NBF7	Transgelin; Belongs to the calponin family.	Uncharacterized protein.	0.680
A0A158NE93	A0A158NDY9	Transgelin; Belongs to the calponin family.	Uncharacterized protein.	0.879