(10 nodes) Leucine-rich repeat, typical subtype network (Atta cephalotes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158NAL3	Uncharacterized protein. (344 aa)
	A0A158NBB1	Uncharacterized protein. (477 aa)
	A0A158NBB2	Uncharacterized protein. (370 aa)
	A0A158NEN9	Uncharacterized protein. (644 aa)
	A0A158NH03	Uncharacterized protein. (406 aa)
	A0A158NTA2	Uncharacterized protein. (784 aa)
	A0A158NV35	Uncharacterized protein. (209 aa)
	A0A158NZ44	Uncharacterized protein. (458 aa)
	A0A158P0Z7	Uncharacterized protein. (335 aa)
	A0A158P1H3	Uncharacterized protein. (337 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158NAL3	A0A158NH03	Uncharacterized protein.	Uncharacterized protein.	0.532
A0A158NAL3	A0A158NZ44	Uncharacterized protein.	Uncharacterized protein.	0.505
A0A158NAL3	A0A158P0Z7	Uncharacterized protein.	Uncharacterized protein.	0.478
A0A158NBB1	A0A158NH03	Uncharacterized protein.	Uncharacterized protein.	0.478
A0A158NBB1	A0A158NTA2	Uncharacterized protein.	Uncharacterized protein.	0.499
A0A158NBB1	A0A158NZ44	Uncharacterized protein.	Uncharacterized protein.	0.487
A0A158NBB2	A0A158NEN9	Uncharacterized protein.	Uncharacterized protein.	0.443
A0A158NBB2	A0A158NH03	Uncharacterized protein.	Uncharacterized protein.	0.426
A0A158NBB2	A0A158NZ44	Uncharacterized protein.	Uncharacterized protein.	0.451
A0A158NEN9	A0A158NBB2	Uncharacterized protein.	Uncharacterized protein.	0.443
A0A158NEN9	A0A158NH03	Uncharacterized protein.	Uncharacterized protein.	0.519
A0A158NEN9	A0A158P0Z7	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A158NH03	A0A158NAL3	Uncharacterized protein.	Uncharacterized protein.	0.532
A0A158NH03	A0A158NBB1	Uncharacterized protein.	Uncharacterized protein.	0.478
A0A158NH03	A0A158NBB2	Uncharacterized protein.	Uncharacterized protein.	0.426
A0A158NH03	A0A158NEN9	Uncharacterized protein.	Uncharacterized protein.	0.519
A0A158NH03	A0A158NTA2	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A158NH03	A0A158NZ44	Uncharacterized protein.	Uncharacterized protein.	0.512
A0A158NH03	A0A158P0Z7	Uncharacterized protein.	Uncharacterized protein.	0.510
A0A158NH03	A0A158P1H3	Uncharacterized protein.	Uncharacterized protein.	0.519