(11 nodes) Mixed, incl. YD repeat, and Class B/2 (Secretin family receptors) network (Atta cephalotes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A158N8V7	LRRCT domain-containing protein. (1493 aa)
	A0A158N9T2	Uncharacterized protein. (2699 aa)
	A0A158NJZ3	Uncharacterized protein. (890 aa)
	A0A158NKY5	Uncharacterized protein. (854 aa)
	A0A158NPI5	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (734 aa)
	A0A158NU41	LRRCT domain-containing protein. (708 aa)
	A0A158NWS7	G_PROTEIN_RECEP_F2_3 domain-containing protein. (334 aa)
	A0A158NXJ0	Uncharacterized protein. (2700 aa)
	A0A158NY27	TNFR-Cys domain-containing protein. (196 aa)
	A0A158P115	Uncharacterized protein. (525 aa)
	A0A158P1F6	Ig-like domain-containing protein. (913 aa)

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A158N8V7	A0A158NPI5	LRRCT domain-containing protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.846
A0A158N8V7	A0A158NWS7	LRRCT domain-containing protein.	G_PROTEIN_RECEP_F2_3 domain-containing protein.	0.433
A0A158N9T2	A0A158NKY5	Uncharacterized protein.	Uncharacterized protein.	0.456
A0A158N9T2	A0A158NPI5	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.994
A0A158N9T2	A0A158NWS7	Uncharacterized protein.	G_PROTEIN_RECEP_F2_3 domain-containing protein.	0.963
A0A158N9T2	A0A158NXJ0	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A158NJZ3	A0A158NPI5	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.846
A0A158NJZ3	A0A158NWS7	Uncharacterized protein.	G_PROTEIN_RECEP_F2_3 domain-containing protein.	0.540
A0A158NKY5	A0A158N9T2	Uncharacterized protein.	Uncharacterized protein.	0.456
A0A158NKY5	A0A158NXJ0	Uncharacterized protein.	Uncharacterized protein.	0.609
A0A158NKY5	A0A158NY27	Uncharacterized protein.	TNFR-Cys domain-containing protein.	0.416
A0A158NPI5	A0A158N8V7	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	LRRCT domain-containing protein.	0.846
A0A158NPI5	A0A158N9T2	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.994
A0A158NPI5	A0A158NJZ3	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.846
A0A158NPI5	A0A158NU41	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	LRRCT domain-containing protein.	0.846
A0A158NPI5	A0A158NWS7	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	G_PROTEIN_RECEP_F2_3 domain-containing protein.	0.858
A0A158NPI5	A0A158NXJ0	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.997
A0A158NPI5	A0A158NY27	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	TNFR-Cys domain-containing protein.	0.991
A0A158NPI5	A0A158P115	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.874
A0A158NPI5	A0A158P1F6	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Ig-like domain-containing protein.	0.846